Wall clock time and date at job start Sun Mar 29 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47354 * 2 1 4 4 C 1.36941 * 119.99936 * 275.36124 * 3 2 1 5 5 H 1.07993 * 120.00235 * 37.65219 * 4 3 2 6 6 C 1.38814 * 119.99851 * 217.65470 * 4 3 2 7 7 N 1.31623 * 120.00322 * 21.21240 * 6 4 3 8 8 Si 1.86798 * 120.00150 * 201.20840 * 6 4 3 9 9 H 1.48497 * 109.46940 * 89.99833 * 8 6 4 10 10 H 1.48496 * 109.47212 * 210.00195 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00097 * 8 6 4 12 12 C 1.46503 * 120.00450 * 95.35643 * 3 2 1 13 13 C 1.50699 * 109.46825 * 270.00184 * 12 3 2 14 14 N 1.30280 * 126.28301 * 89.97722 * 13 12 3 15 15 N 1.28664 * 109.38265 * 179.97438 * 14 13 12 16 16 C 1.30275 * 109.38001 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.28381 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47135 * 300.02204 * 17 16 15 19 19 C 1.53001 * 109.47026 * 60.01775 * 17 16 15 20 20 O 1.34357 * 126.28500 * 270.25454 * 13 12 3 21 21 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46862 * 300.00232 * 1 2 3 23 23 H 1.08994 * 109.47482 * 59.99662 * 1 2 3 24 24 H 1.09001 * 109.47318 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47187 * 119.99539 * 2 1 3 26 26 H 0.96993 * 120.00527 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47269 * 149.99944 * 12 3 2 28 28 H 1.08998 * 109.46991 * 29.99890 * 12 3 2 29 29 H 1.08992 * 109.47230 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.47048 * 59.99305 * 18 17 16 31 31 H 1.08994 * 109.47196 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.46656 * 299.99946 * 18 17 16 33 33 H 1.08996 * 109.47153 * 60.00614 * 19 17 16 34 34 H 1.09006 * 109.47063 * 180.02562 * 19 17 16 35 35 H 1.09001 * 109.47658 * 300.00360 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1421 2.0636 -1.1808 5 1 1.4083 1.9293 -1.9616 6 6 3.2109 2.9280 -1.3740 7 7 4.3018 2.7982 -0.6490 8 14 3.1012 4.2754 -2.6631 9 1 2.5397 5.5047 -2.0476 10 1 4.4574 4.5632 -3.1951 11 1 2.2191 3.8295 -3.7714 12 6 2.3742 2.0323 1.2632 13 6 1.1625 2.7272 1.8289 14 7 0.2854 2.2087 2.6408 15 7 -0.6125 3.0877 2.9173 16 6 -0.3392 4.1967 2.2907 17 6 -1.1408 5.4718 2.3435 18 6 -2.5586 5.2044 1.8340 19 6 -1.2042 5.9749 3.7870 20 8 0.7855 3.9934 1.5844 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.0485 3.4024 -0.7838 27 1 3.1625 2.7638 1.0854 28 1 2.7270 1.2828 1.9715 29 1 -0.6657 6.2259 1.7163 30 1 -3.0338 4.4500 2.4612 31 1 -3.1385 6.1264 1.8727 32 1 -2.5134 4.8459 0.8057 33 1 -0.1942 6.1655 4.1500 34 1 -1.7844 6.8969 3.8253 35 1 -1.6794 5.2207 4.4143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102768291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:08 Heat of formation + Delta-G solvation = 40.399919 kcal Electronic energy + Delta-G solvation = -17717.319142 eV Core-core repulsion = 14945.735323 eV Total energy + Delta-G solvation = -2771.583819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.32509 -36.32382 -35.59123 -35.23527 -32.04280 -30.76461 -28.78715 -27.22592 -26.29760 -23.94413 -23.65757 -21.70406 -20.43389 -20.37764 -17.12365 -16.55917 -16.25440 -15.33099 -14.66853 -14.49578 -13.95476 -13.80961 -13.63059 -13.12729 -12.51617 -12.23840 -12.09440 -11.93971 -11.57142 -11.42937 -11.29284 -11.25126 -11.16575 -11.04362 -10.87781 -10.69991 -10.48370 -10.18873 -10.06118 -9.91817 -8.72379 -8.64216 -6.90178 -6.05753 -3.63542 1.99185 3.07140 3.16684 3.27684 3.34140 3.35768 4.31518 4.47966 4.83795 5.02593 5.11479 5.21756 5.35332 5.45294 5.56760 5.63242 5.78001 5.85428 6.01542 6.03417 6.18050 6.20559 6.28151 6.34739 6.40686 6.49431 6.59948 6.65133 6.84876 7.11686 7.17863 7.64746 8.26646 8.90081 9.14212 9.52486 10.08921 10.96699 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.009064 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.020835 B = 3088.439665 C = 3767.899963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.562 5.562 4 C -0.272 4.272 5 H 0.065 0.935 6 C 0.020 3.980 7 N -0.881 5.881 8 Si 0.902 3.098 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.219 3.781 13 C 0.186 3.814 14 N -0.323 5.323 15 N -0.291 5.291 16 C 0.125 3.875 17 C 0.008 3.992 18 C -0.142 4.142 19 C -0.141 4.141 20 O -0.219 6.219 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.261 0.739 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 4.588 4.813 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 N -0.281 5.281 4 C -0.401 4.401 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.088 3.912 13 C -0.027 4.027 14 N -0.170 5.170 15 N -0.139 5.139 16 C -0.088 4.088 17 C -0.012 4.012 18 C -0.200 4.200 19 C -0.199 4.199 20 O -0.097 6.097 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.882 3.757 5.509 10.324 hybrid contribution 0.429 1.592 -1.439 2.189 sum -7.453 5.350 4.070 10.036 Atomic orbital electron populations 1.22322 0.99581 0.99549 1.01609 1.20973 0.91959 0.85898 0.99561 1.43822 1.74567 1.08419 1.01315 1.19080 1.05267 1.22311 0.93429 0.91693 1.25245 0.93933 1.00764 0.98206 1.69938 1.03122 1.36972 1.42108 0.86308 0.77233 0.82249 0.81191 1.20899 1.21319 1.19972 1.19978 0.87670 0.96507 0.87008 1.31169 1.01016 0.78261 0.92253 1.74297 1.01904 1.24276 1.16554 1.74096 1.20745 0.97907 1.21129 1.27678 0.87897 0.99439 0.93759 1.19519 0.93916 0.88394 0.99397 1.21832 0.93853 1.02501 1.01843 1.21823 1.02554 1.01442 0.94078 1.84910 1.35800 1.32774 1.56195 0.94089 0.92835 0.93626 0.92883 0.93868 0.92909 0.86085 0.90141 0.88746 0.91332 0.91236 0.92209 0.92321 0.91233 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 10.21 37.15 0.38 -3.03 16 2 C 0.14 3.01 6.44 -4.05 -0.03 2.99 16 3 N -0.56 -13.77 2.42 -174.62 -0.42 -14.19 16 4 C -0.27 -7.22 9.45 -15.06 -0.14 -7.36 16 5 H 0.07 1.75 7.91 -52.49 -0.42 1.33 16 6 C 0.02 0.54 4.96 -17.43 -0.09 0.45 16 7 N -0.88 -23.90 11.46 55.49 0.64 -23.27 16 8 Si 0.90 20.94 29.60 -169.99 -5.03 15.91 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.22 5.13 5.95 -5.19 -0.03 5.10 16 13 C 0.19 4.27 7.91 -12.94 -0.10 4.17 16 14 N -0.32 -7.28 11.29 32.55 0.37 -6.91 16 15 N -0.29 -6.10 12.22 32.55 0.40 -5.70 16 16 C 0.12 2.40 6.99 -12.94 -0.09 2.31 16 17 C 0.01 0.11 3.39 -91.77 -0.31 -0.20 16 18 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 19 C -0.14 -1.60 9.18 37.16 0.34 -1.26 16 20 O -0.22 -4.95 10.87 5.40 0.06 -4.89 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 1.15 7.03 -51.93 -0.37 0.78 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 25 H 0.04 0.85 7.83 -51.93 -0.41 0.45 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.12 3.08 5.51 -51.93 -0.29 2.80 16 28 H 0.08 1.73 7.86 -51.93 -0.41 1.32 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 298.67 15.07 4.50 4.50 Total: -1.00 -29.38 298.67 -4.46 -33.84 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.24 Total: -1.06 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 0.27 Total: 1.77 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.98 Total: -50.07 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.06 Total: -4.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.38 -4.46 -33.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102768291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.243 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds