Wall clock time and date at job start Sun Mar 29 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47354 * 2 1 4 4 C 1.36941 * 119.99936 * 275.36124 * 3 2 1 5 5 H 1.07993 * 120.00235 * 37.65219 * 4 3 2 6 6 C 1.38814 * 119.99851 * 217.65470 * 4 3 2 7 7 N 1.31623 * 120.00322 * 21.21240 * 6 4 3 8 8 Si 1.86798 * 120.00150 * 201.20840 * 6 4 3 9 9 H 1.48497 * 109.46940 * 89.99833 * 8 6 4 10 10 H 1.48496 * 109.47212 * 210.00195 * 8 6 4 11 11 H 1.48500 * 109.47131 * 330.00097 * 8 6 4 12 12 C 1.46503 * 120.00450 * 95.35643 * 3 2 1 13 13 C 1.50699 * 109.46825 * 270.00184 * 12 3 2 14 14 N 1.30280 * 126.28301 * 89.97722 * 13 12 3 15 15 N 1.28664 * 109.38265 * 179.97438 * 14 13 12 16 16 C 1.30275 * 109.38001 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.28381 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47135 * 300.02204 * 17 16 15 19 19 C 1.53001 * 109.47026 * 60.01775 * 17 16 15 20 20 O 1.34357 * 126.28500 * 270.25454 * 13 12 3 21 21 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46862 * 300.00232 * 1 2 3 23 23 H 1.08994 * 109.47482 * 59.99662 * 1 2 3 24 24 H 1.09001 * 109.47318 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47187 * 119.99539 * 2 1 3 26 26 H 0.96993 * 120.00527 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47269 * 149.99944 * 12 3 2 28 28 H 1.08998 * 109.46991 * 29.99890 * 12 3 2 29 29 H 1.08992 * 109.47230 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.47048 * 59.99305 * 18 17 16 31 31 H 1.08994 * 109.47196 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.46656 * 299.99946 * 18 17 16 33 33 H 1.08996 * 109.47153 * 60.00614 * 19 17 16 34 34 H 1.09006 * 109.47063 * 180.02562 * 19 17 16 35 35 H 1.09001 * 109.47658 * 300.00360 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1421 2.0636 -1.1808 5 1 1.4083 1.9293 -1.9616 6 6 3.2109 2.9280 -1.3740 7 7 4.3018 2.7982 -0.6490 8 14 3.1012 4.2754 -2.6631 9 1 2.5397 5.5047 -2.0476 10 1 4.4574 4.5632 -3.1951 11 1 2.2191 3.8295 -3.7714 12 6 2.3742 2.0323 1.2632 13 6 1.1625 2.7272 1.8289 14 7 0.2854 2.2087 2.6408 15 7 -0.6125 3.0877 2.9173 16 6 -0.3392 4.1967 2.2907 17 6 -1.1408 5.4718 2.3435 18 6 -2.5586 5.2044 1.8340 19 6 -1.2042 5.9749 3.7870 20 8 0.7855 3.9934 1.5844 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.0485 3.4024 -0.7838 27 1 3.1625 2.7638 1.0854 28 1 2.7270 1.2828 1.9715 29 1 -0.6657 6.2259 1.7163 30 1 -3.0338 4.4500 2.4612 31 1 -3.1385 6.1264 1.8727 32 1 -2.5134 4.8459 0.8057 33 1 -0.1942 6.1655 4.1500 34 1 -1.7844 6.8969 3.8253 35 1 -1.6794 5.2207 4.4143 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102768291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:08 Heat of formation + Delta-G solvation = 19.761576 kcal Electronic energy + Delta-G solvation = -17718.214088 eV Core-core repulsion = 14945.735323 eV Total energy + Delta-G solvation = -2772.478764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.01237 -38.10254 -37.00746 -36.73065 -33.97383 -32.44070 -30.52644 -28.14973 -28.11010 -25.76035 -25.13304 -23.42566 -22.24434 -21.70915 -19.02066 -18.16488 -17.94413 -17.09427 -16.21212 -15.98369 -15.61437 -15.58307 -15.12965 -14.30920 -14.12747 -13.76538 -13.35731 -13.29535 -13.19183 -13.04905 -12.87643 -12.78465 -12.69987 -12.47958 -12.42095 -12.28618 -12.19016 -11.99637 -11.69805 -11.61345 -10.68333 -10.30934 -8.83849 -8.03736 -5.66266 0.34758 1.39546 1.45017 1.48267 1.52827 1.55364 2.41448 2.96363 3.18055 3.54011 3.61969 3.86213 4.00945 4.11829 4.33928 4.37085 4.58454 4.64349 4.69843 4.74318 4.76519 4.85121 4.85684 4.89521 5.00274 5.03226 5.17077 5.25277 5.26051 5.31077 5.46626 5.58654 6.30402 6.94315 7.45051 7.59048 8.13453 8.96351 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.009064 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.020835 B = 3088.439665 C = 3767.899963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 N -0.577 5.577 4 C -0.285 4.285 5 H 0.055 0.945 6 C -0.019 4.019 7 N -0.904 5.904 8 Si 0.956 3.044 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.226 3.774 13 C 0.172 3.828 14 N -0.327 5.327 15 N -0.311 5.311 16 C 0.140 3.860 17 C 0.001 3.999 18 C -0.137 4.137 19 C -0.135 4.135 20 O -0.240 6.240 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.261 0.739 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 5.727 4.982 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.297 5.297 4 C -0.415 4.415 5 H 0.073 0.927 6 C -0.218 4.218 7 N -0.545 5.545 8 Si 0.783 3.217 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.096 3.904 13 C -0.042 4.042 14 N -0.174 5.174 15 N -0.157 5.157 16 C -0.072 4.072 17 C -0.019 4.019 18 C -0.195 4.195 19 C -0.193 4.193 20 O -0.119 6.119 21 H 0.091 0.909 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.209 4.877 5.696 11.876 hybrid contribution 0.759 1.261 -1.425 2.048 sum -8.450 6.139 4.271 11.284 Atomic orbital electron populations 1.22160 0.98430 1.01072 0.99933 1.21094 0.92767 0.84642 1.00193 1.43976 1.75052 1.09559 1.01068 1.19170 1.05068 1.23120 0.94130 0.92727 1.25857 0.93650 1.02263 1.00050 1.70021 1.03523 1.37601 1.43376 0.85465 0.77235 0.79708 0.79303 1.21055 1.20926 1.19454 1.19743 0.87311 0.96314 0.87067 1.30842 1.01299 0.78748 0.93309 1.74238 1.01997 1.24855 1.16298 1.74058 1.20831 0.98470 1.22347 1.28939 0.86421 1.00626 0.91237 1.20039 0.94085 0.86098 1.01639 1.21843 0.92900 1.04284 1.00483 1.21829 1.02858 1.02783 0.91783 1.84901 1.37194 1.32765 1.57019 0.90926 0.94544 0.95066 0.92989 0.92386 0.92953 0.88277 0.88877 0.87379 0.92099 0.87248 0.93731 0.92941 0.87395 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.12 10.21 71.98 0.73 -5.39 16 2 C 0.14 5.81 6.44 86.38 0.56 6.36 16 3 N -0.58 -28.48 2.42 -706.37 -1.71 -30.19 16 4 C -0.29 -15.31 9.45 84.03 0.79 -14.52 16 5 H 0.06 2.99 7.91 -2.91 -0.02 2.96 16 6 C -0.02 -0.99 4.96 84.86 0.42 -0.57 16 7 N -0.90 -49.56 11.46 21.65 0.25 -49.31 16 8 Si 0.96 43.00 29.60 68.60 2.03 45.03 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.23 10.73 5.95 85.63 0.51 11.24 16 13 C 0.17 7.95 7.91 88.34 0.70 8.65 16 14 N -0.33 -14.72 11.29 -165.50 -1.87 -16.59 16 15 N -0.31 -12.88 12.22 -165.50 -2.02 -14.90 16 16 C 0.14 5.28 6.99 88.34 0.62 5.90 16 17 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 18 C -0.14 -2.96 9.18 71.98 0.66 -2.30 16 19 C -0.13 -2.67 9.18 71.98 0.66 -2.01 16 20 O -0.24 -10.86 10.87 -3.59 -0.04 -10.90 16 21 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.04 1.53 7.03 -2.38 -0.02 1.51 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 2.18 8.08 -2.39 -0.02 2.16 16 25 H 0.06 2.25 7.83 -2.39 -0.02 2.23 16 26 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 27 H 0.10 5.18 5.51 -2.39 -0.01 5.17 16 28 H 0.09 4.05 7.86 -2.39 -0.02 4.03 16 29 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -63.06 298.67 3.32 -59.74 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.07 Total: 9.75 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.61 Total: 7.37 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -5.35 Total: -110.99 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.04 Total: -10.90 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.06 3.32 -59.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102768291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.498 kcal (2) G-P(sol) polarization free energy of solvation -63.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds