Wall clock time and date at job start Sun Mar 29 2020 22:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47160 * 2 1 4 4 N 1.46499 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99992 * 269.42464 * 4 3 2 6 6 H 1.07997 * 119.99757 * 326.11286 * 5 4 3 7 7 C 1.38813 * 120.00157 * 146.12322 * 5 4 3 8 8 N 1.31616 * 119.99717 * 336.56011 * 7 5 4 9 9 Si 1.86805 * 119.99947 * 156.55476 * 7 5 4 10 10 H 1.48497 * 109.46998 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46696 * 120.00183 * 9 7 5 12 12 H 1.48498 * 109.47051 * 239.99964 * 9 7 5 13 13 C 1.46506 * 119.99854 * 89.41465 * 4 3 2 14 14 C 1.50698 * 109.46735 * 90.00526 * 13 4 3 15 15 N 1.30275 * 126.28151 * 90.02863 * 14 13 4 16 16 N 1.28662 * 109.38035 * 179.97438 * 15 14 13 17 17 C 1.30274 * 109.38358 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.28735 * 179.97438 * 17 16 15 19 19 C 1.52990 * 109.47490 * 90.02397 * 18 17 16 20 20 O 1.34366 * 126.27891 * 270.30538 * 14 13 4 21 21 H 1.09001 * 109.46678 * 300.00209 * 1 2 3 22 22 H 1.08994 * 109.46954 * 59.99440 * 1 2 3 23 23 H 1.08994 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46678 * 239.99791 * 2 1 3 25 25 H 1.09000 * 109.47144 * 119.99869 * 2 1 3 26 26 H 1.09001 * 109.47495 * 60.00292 * 3 2 1 27 27 H 1.09004 * 109.47469 * 300.00057 * 3 2 1 28 28 H 0.97004 * 119.99386 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47061 * 330.00566 * 13 4 3 30 30 H 1.08999 * 109.46942 * 210.00703 * 13 4 3 31 31 H 1.09007 * 109.46659 * 330.02298 * 18 17 16 32 32 H 1.09004 * 109.47345 * 210.02833 * 18 17 16 33 33 H 1.09007 * 109.47250 * 60.00263 * 19 18 17 34 34 H 1.09004 * 109.47182 * 300.00536 * 19 18 17 35 35 H 1.08999 * 109.47460 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4543 1.1849 6 1 3.7881 1.9842 2.0357 7 6 5.4017 0.7853 1.2931 8 7 5.6799 -0.2084 0.4762 9 14 6.6371 1.2955 2.5982 10 1 6.0879 2.4301 3.3830 11 1 6.9014 0.1492 3.5045 12 1 7.9038 1.7121 1.9447 13 6 4.2370 1.4298 -1.2697 14 6 4.4880 2.8461 -1.7189 15 7 5.5263 3.5758 -1.4245 16 7 5.4075 4.7308 -1.9787 17 6 4.2896 4.7773 -2.6460 18 6 3.7718 5.9501 -3.4381 19 6 4.2758 5.8545 -4.8794 20 8 3.6794 3.5900 -2.4924 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.5267 -0.6756 0.5516 29 1 3.6475 0.9083 -2.0239 30 1 5.1894 0.9172 -1.1346 31 1 4.1281 6.8773 -2.9893 32 1 2.6818 5.9393 -3.4328 33 1 3.9194 4.9272 -5.3282 34 1 5.3657 5.8652 -4.8847 35 1 3.9016 6.7030 -5.4522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104675939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:27 Heat of formation + Delta-G solvation = 39.474448 kcal Electronic energy + Delta-G solvation = -17400.924499 eV Core-core repulsion = 14629.300549 eV Total energy + Delta-G solvation = -2771.623950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.33387 -36.44685 -35.29661 -34.19131 -33.02734 -31.19494 -29.66400 -26.67363 -25.67516 -24.21773 -22.66789 -21.55530 -21.22023 -20.03773 -17.25753 -16.48826 -16.20089 -15.14210 -14.74410 -14.48608 -14.28141 -13.95252 -13.57236 -13.21880 -12.74397 -12.63804 -11.93846 -11.71680 -11.57638 -11.51775 -11.28457 -11.08033 -11.03215 -10.82334 -10.69077 -10.62377 -10.22427 -10.12517 -10.02042 -9.79743 -8.73452 -8.61915 -6.94290 -6.00188 -3.51162 1.94118 3.03625 3.23147 3.38728 3.48306 3.50392 4.40524 4.50278 4.92164 5.09842 5.20408 5.28540 5.33483 5.46287 5.66390 5.67108 5.71959 5.76140 6.01830 6.03492 6.12743 6.16550 6.29576 6.36390 6.44205 6.51481 6.56063 6.64601 6.93339 7.12051 7.25839 7.71066 8.27613 8.93634 9.18944 9.59195 10.10168 11.04469 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.008968 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.762115 B = 3121.507668 C = 4336.894019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.144 3.856 4 N -0.563 5.563 5 C -0.268 4.268 6 H 0.067 0.933 7 C 0.024 3.976 8 N -0.883 5.883 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.220 3.780 14 C 0.178 3.822 15 N -0.297 5.297 16 N -0.293 5.293 17 C 0.117 3.883 18 C -0.018 4.018 19 C -0.149 4.149 20 O -0.238 6.238 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 5.911 -7.791 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.018 3.982 4 N -0.281 5.281 5 C -0.397 4.397 6 H 0.085 0.915 7 C -0.177 4.177 8 N -0.524 5.524 9 Si 0.732 3.268 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.089 3.911 14 C -0.035 4.035 15 N -0.143 5.143 16 N -0.141 5.141 17 C -0.095 4.095 18 C -0.057 4.057 19 C -0.207 4.207 20 O -0.118 6.118 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.642 6.131 -7.234 11.034 hybrid contribution -0.425 -0.035 0.207 0.474 sum -6.066 6.096 -7.027 11.106 Atomic orbital electron populations 1.21750 0.97483 1.00534 1.00791 1.22021 0.93295 0.99991 1.02458 1.21067 0.84121 0.94194 0.98802 1.43885 0.99990 1.82719 1.01545 1.19086 1.03460 1.27204 0.89972 0.91543 1.25074 1.00074 0.94320 0.98256 1.69871 1.23813 1.18770 1.39960 0.86236 0.81688 0.78113 0.80778 1.20040 1.21601 1.20738 1.20114 1.03364 0.80530 0.87106 1.31289 0.84447 0.99922 0.87867 1.74411 1.22211 0.97717 1.19948 1.74261 1.16069 1.14531 1.09211 1.27699 0.91548 0.88284 1.01944 1.19914 1.01260 0.90718 0.93800 1.21774 1.02244 1.02512 0.94158 1.84827 1.47562 1.23382 1.55996 0.93343 0.93611 0.93619 0.92786 0.91461 0.93401 0.94612 0.92964 0.92129 0.83704 0.88034 0.89297 0.92212 0.91798 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.14 -2.56 6.26 -26.73 -0.17 -2.73 16 3 C 0.14 2.94 5.67 -4.05 -0.02 2.92 16 4 N -0.56 -13.67 2.44 -174.61 -0.43 -14.09 16 5 C -0.27 -7.21 9.48 -15.06 -0.14 -7.36 16 6 H 0.07 1.81 7.93 -52.49 -0.42 1.40 16 7 C 0.02 0.65 4.94 -17.43 -0.09 0.56 16 8 N -0.88 -24.32 11.34 55.49 0.63 -23.69 16 9 Si 0.90 22.09 29.61 -169.99 -5.03 17.06 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.22 5.13 5.92 -5.19 -0.03 5.10 16 14 C 0.18 4.11 8.06 -12.94 -0.10 4.00 16 15 N -0.30 -7.37 12.22 32.55 0.40 -6.97 16 16 N -0.29 -6.47 12.22 32.55 0.40 -6.07 16 17 C 0.12 2.17 7.73 -12.94 -0.10 2.07 16 18 C -0.02 -0.22 6.56 -27.89 -0.18 -0.40 16 19 C -0.15 -1.51 9.89 37.15 0.37 -1.14 16 20 O -0.24 -4.87 10.87 5.35 0.06 -4.81 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 27 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 29 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.15 3.79 5.33 -51.93 -0.28 3.51 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -30.39 301.63 -4.84 -35.23 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.31 Total: -2.44 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.10 Total: 1.24 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 1.00 Total: -50.82 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: 0.06 Total: -4.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.39 -4.84 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.709 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds