Wall clock time and date at job start Sun Mar 29 2020 22:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47160 * 2 1 4 4 N 1.46499 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99992 * 269.42464 * 4 3 2 6 6 H 1.07997 * 119.99757 * 326.11286 * 5 4 3 7 7 C 1.38813 * 120.00157 * 146.12322 * 5 4 3 8 8 N 1.31616 * 119.99717 * 336.56011 * 7 5 4 9 9 Si 1.86805 * 119.99947 * 156.55476 * 7 5 4 10 10 H 1.48497 * 109.46998 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46696 * 120.00183 * 9 7 5 12 12 H 1.48498 * 109.47051 * 239.99964 * 9 7 5 13 13 C 1.46506 * 119.99854 * 89.41465 * 4 3 2 14 14 C 1.50698 * 109.46735 * 90.00526 * 13 4 3 15 15 N 1.30275 * 126.28151 * 90.02863 * 14 13 4 16 16 N 1.28662 * 109.38035 * 179.97438 * 15 14 13 17 17 C 1.30274 * 109.38358 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.28735 * 179.97438 * 17 16 15 19 19 C 1.52990 * 109.47490 * 90.02397 * 18 17 16 20 20 O 1.34366 * 126.27891 * 270.30538 * 14 13 4 21 21 H 1.09001 * 109.46678 * 300.00209 * 1 2 3 22 22 H 1.08994 * 109.46954 * 59.99440 * 1 2 3 23 23 H 1.08994 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46678 * 239.99791 * 2 1 3 25 25 H 1.09000 * 109.47144 * 119.99869 * 2 1 3 26 26 H 1.09001 * 109.47495 * 60.00292 * 3 2 1 27 27 H 1.09004 * 109.47469 * 300.00057 * 3 2 1 28 28 H 0.97004 * 119.99386 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47061 * 330.00566 * 13 4 3 30 30 H 1.08999 * 109.46942 * 210.00703 * 13 4 3 31 31 H 1.09007 * 109.46659 * 330.02298 * 18 17 16 32 32 H 1.09004 * 109.47345 * 210.02833 * 18 17 16 33 33 H 1.09007 * 109.47250 * 60.00263 * 19 18 17 34 34 H 1.09004 * 109.47182 * 300.00536 * 19 18 17 35 35 H 1.08999 * 109.47460 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4543 1.1849 6 1 3.7881 1.9842 2.0357 7 6 5.4017 0.7853 1.2931 8 7 5.6799 -0.2084 0.4762 9 14 6.6371 1.2955 2.5982 10 1 6.0879 2.4301 3.3830 11 1 6.9014 0.1492 3.5045 12 1 7.9038 1.7121 1.9447 13 6 4.2370 1.4298 -1.2697 14 6 4.4880 2.8461 -1.7189 15 7 5.5263 3.5758 -1.4245 16 7 5.4075 4.7308 -1.9787 17 6 4.2896 4.7773 -2.6460 18 6 3.7718 5.9501 -3.4381 19 6 4.2758 5.8545 -4.8794 20 8 3.6794 3.5900 -2.4924 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.5267 -0.6756 0.5516 29 1 3.6475 0.9083 -2.0239 30 1 5.1894 0.9172 -1.1346 31 1 4.1281 6.8773 -2.9893 32 1 2.6818 5.9393 -3.4328 33 1 3.9194 4.9272 -5.3282 34 1 5.3657 5.8652 -4.8847 35 1 3.9016 6.7030 -5.4522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104675939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:27 Heat of formation + Delta-G solvation = 17.475855 kcal Electronic energy + Delta-G solvation = -17401.878429 eV Core-core repulsion = 14629.300549 eV Total energy + Delta-G solvation = -2772.577881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.00267 -38.23265 -36.98401 -35.34212 -34.67393 -32.99547 -31.24971 -28.33517 -27.41837 -25.46680 -24.42413 -23.14793 -22.64045 -21.68930 -19.16146 -18.16586 -17.79143 -17.00629 -16.15043 -16.05574 -15.78753 -15.60871 -15.00585 -14.86516 -14.10775 -13.66486 -13.42697 -13.33165 -13.27032 -12.83325 -12.78988 -12.68655 -12.59749 -12.41406 -12.30850 -12.20039 -12.03030 -11.86916 -11.67560 -11.37444 -10.66156 -10.37780 -8.88624 -8.03806 -5.56749 0.34179 1.36824 1.47259 1.50856 1.52911 1.55585 2.43979 3.01805 3.23884 3.52747 3.69218 3.98131 4.19372 4.24039 4.35519 4.40059 4.44066 4.59927 4.70392 4.75784 4.80130 4.89174 4.91224 4.96693 5.04838 5.14588 5.27784 5.28367 5.31898 5.44369 5.55692 5.68830 6.30330 6.95176 7.50399 7.62924 8.11680 8.98503 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.008968 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.762115 B = 3121.507668 C = 4336.894019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.142 3.858 4 N -0.577 5.577 5 C -0.275 4.275 6 H 0.056 0.944 7 C -0.014 4.014 8 N -0.902 5.902 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.292 1.292 13 C 0.226 3.774 14 C 0.170 3.830 15 N -0.335 5.335 16 N -0.332 5.332 17 C 0.145 3.855 18 C -0.020 4.020 19 C -0.144 4.144 20 O -0.236 6.236 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.259 0.741 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 7.224 -8.982 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.018 3.982 4 N -0.297 5.297 5 C -0.405 4.405 6 H 0.074 0.926 7 C -0.213 4.213 8 N -0.544 5.544 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.219 1.219 13 C 0.095 3.905 14 C -0.045 4.045 15 N -0.181 5.181 16 N -0.178 5.178 17 C -0.068 4.068 18 C -0.059 4.059 19 C -0.202 4.202 20 O -0.116 6.116 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.425 7.458 -8.424 13.480 hybrid contribution 0.068 -0.312 0.461 0.561 sum -7.357 7.146 -7.963 12.984 Atomic orbital electron populations 1.21663 0.94017 1.01931 1.01975 1.21868 0.96233 0.98089 1.00648 1.21196 0.82077 0.95529 0.99430 1.44032 1.01448 1.83177 1.00995 1.19154 1.03992 1.26599 0.90746 0.92620 1.25568 1.01208 0.94624 0.99883 1.69946 1.23942 1.19475 1.41084 0.85538 0.79609 0.77941 0.79303 1.20074 1.20602 1.21923 1.19839 1.02356 0.80849 0.87460 1.30892 0.84820 0.99938 0.88838 1.74335 1.23505 0.99059 1.21156 1.74191 1.18263 1.13970 1.11330 1.29076 0.89911 0.88399 0.99416 1.20443 1.03033 0.88377 0.93998 1.21779 1.01421 1.04013 0.92986 1.84822 1.47147 1.24005 1.55610 0.92657 0.91900 0.92166 0.93501 0.94367 0.93644 0.92913 0.93158 0.90019 0.86537 0.86158 0.86379 0.92656 0.93175 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.67 6.26 30.59 0.19 -4.48 16 3 C 0.14 5.70 5.67 86.38 0.49 6.19 16 4 N -0.58 -28.21 2.44 -706.33 -1.72 -29.93 16 5 C -0.28 -15.05 9.48 84.03 0.80 -14.26 16 6 H 0.06 3.10 7.93 -2.91 -0.02 3.08 16 7 C -0.01 -0.76 4.94 84.86 0.42 -0.34 16 8 N -0.90 -50.83 11.34 21.65 0.25 -50.58 16 9 Si 0.95 46.18 29.61 68.60 2.03 48.21 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 13 C 0.23 10.64 5.92 85.63 0.51 11.15 16 14 C 0.17 7.85 8.06 88.34 0.71 8.56 16 15 N -0.33 -16.82 12.22 -165.50 -2.02 -18.84 16 16 N -0.33 -14.53 12.22 -165.49 -2.02 -16.55 16 17 C 0.14 5.08 7.73 88.34 0.68 5.76 16 18 C -0.02 -0.41 6.56 29.84 0.20 -0.22 16 19 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 20 O -0.24 -9.32 10.87 -3.76 -0.04 -9.36 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 27 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.08 3.40 8.07 -2.38 -0.02 3.38 16 30 H 0.12 6.27 5.33 -2.39 -0.01 6.26 16 31 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.07 301.63 2.95 -64.12 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.06 Total: 5.25 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.42 Total: 7.69 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -5.52 Total: -115.90 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.04 Total: -9.36 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.07 2.95 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104675939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.591 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds