Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47731 * 2 1 4 4 C 1.50700 * 109.47230 * 120.00543 * 2 1 3 5 5 H 1.07995 * 120.00385 * 119.99655 * 4 2 1 6 6 C 1.37883 * 119.99630 * 299.99521 * 4 2 1 7 7 N 1.31519 * 119.99543 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00148 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47278 * 89.99917 * 8 6 4 10 10 H 1.48504 * 109.47160 * 210.00061 * 8 6 4 11 11 H 1.48496 * 109.47117 * 329.99986 * 8 6 4 12 12 N 1.46506 * 109.46642 * 240.00058 * 2 1 3 13 13 C 1.46496 * 120.00092 * 300.00091 * 12 2 1 14 14 C 1.34773 * 119.99706 * 120.00274 * 12 2 1 15 15 O 1.21599 * 120.00101 * 1.56027 * 14 12 2 16 16 C 1.47491 * 119.99800 * 181.55799 * 14 12 2 17 17 C 1.32407 * 118.47855 * 172.85417 * 16 14 12 18 18 C 1.50458 * 122.28750 * 180.40894 * 17 16 14 19 19 C 1.53232 * 109.45428 * 342.43511 * 18 17 16 20 20 C 1.53442 * 108.25588 * 47.15205 * 19 18 17 21 21 O 1.35498 * 118.47961 * 352.83299 * 16 14 12 22 22 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46726 * 299.99772 * 1 2 3 24 24 H 1.08998 * 109.47304 * 59.99616 * 1 2 3 25 25 H 0.97004 * 119.99387 * 179.97438 * 7 6 4 26 26 H 1.09009 * 109.47139 * 263.54480 * 13 12 2 27 27 H 1.08999 * 109.47107 * 23.54619 * 13 12 2 28 28 H 1.08996 * 109.47284 * 143.54976 * 13 12 2 29 29 H 1.07998 * 118.85406 * 0.38508 * 17 16 14 30 30 H 1.09009 * 109.47276 * 102.42893 * 18 17 16 31 31 H 1.09008 * 109.47435 * 222.43378 * 18 17 16 32 32 H 1.09004 * 109.70548 * 166.85039 * 19 18 17 33 33 H 1.09007 * 109.70603 * 287.42706 * 19 18 17 34 34 H 1.09003 * 109.69588 * 177.35639 * 20 19 18 35 35 H 1.08996 * 109.68332 * 56.77328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0182 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.1103 1.1199 -1.8768 16 6 3.2562 -0.7205 -3.3048 17 6 3.8934 -0.0110 -4.2234 18 6 4.3946 -0.6201 -5.5046 19 6 4.4506 -2.1443 -5.3574 20 6 3.1271 -2.6167 -4.7413 21 8 3.0104 -2.0466 -3.4347 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.9033 -0.5282 4.4375 26 1 2.4709 -2.7349 -1.0734 27 1 0.7473 -2.3304 -0.8887 28 1 1.5113 -2.2578 -2.4947 29 1 4.0587 1.0416 -4.0470 30 1 3.7198 -0.3583 -6.3198 31 1 5.3924 -0.2390 -5.7222 32 1 4.5849 -2.6035 -6.3369 33 1 5.2794 -2.4204 -4.7054 34 1 3.1230 -3.7043 -4.6692 35 1 2.2945 -2.2860 -5.3621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = -43.043546 kcal Electronic energy + Delta-G solvation = -17739.896361 eV Core-core repulsion = 14932.401411 eV Total energy + Delta-G solvation = -2807.494950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41690 -38.53027 -35.69246 -34.01083 -32.63283 -31.50450 -30.14999 -26.34499 -25.69664 -25.07404 -24.09549 -21.74689 -19.25117 -18.70060 -17.08255 -16.57374 -16.33831 -15.63645 -15.45809 -14.66759 -14.27443 -14.10223 -13.76314 -13.26036 -13.01387 -12.89359 -12.62123 -12.24973 -12.18278 -11.75907 -11.45529 -11.13902 -11.09879 -10.80534 -10.67728 -10.41834 -10.11400 -9.64380 -9.35094 -9.16578 -8.61337 -8.38463 -7.63096 -6.11778 -4.12243 1.73809 3.25139 3.26795 3.38603 3.41477 3.75071 3.91792 4.37453 4.62010 4.69587 4.82293 5.11848 5.19657 5.22891 5.37883 5.48707 5.63625 5.75711 5.93762 5.99069 6.12652 6.22301 6.27423 6.34388 6.40137 6.49045 6.64788 6.86589 7.08918 7.30114 7.53865 7.65129 8.20499 8.48347 8.81795 8.91862 9.48817 11.01047 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044057 B = 0.006541 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.394520 B = 4279.886904 C = 4470.696805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.226 3.774 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.571 5.571 13 C 0.084 3.916 14 C 0.554 3.446 15 O -0.543 6.543 16 C 0.044 3.956 17 C -0.209 4.209 18 C -0.082 4.082 19 C -0.161 4.161 20 C 0.049 3.951 21 O -0.300 6.300 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.266 0.734 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -3.627 -17.698 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.125 3.875 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.299 5.299 13 C -0.059 4.059 14 C 0.341 3.659 15 O -0.424 6.424 16 C -0.003 4.003 17 C -0.231 4.231 18 C -0.119 4.119 19 C -0.199 4.199 20 C -0.026 4.026 21 O -0.214 6.214 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.224 -3.191 -17.180 17.475 hybrid contribution -0.470 0.665 0.077 0.818 sum -0.246 -2.526 -17.103 17.290 Atomic orbital electron populations 1.22462 0.98924 1.01207 0.99302 1.19371 0.90108 0.95216 0.82833 0.91934 1.21158 1.32656 1.14234 0.88374 0.90251 1.24870 0.95707 0.96596 0.95595 1.69882 1.45271 1.40172 0.97940 0.86912 0.80422 0.83853 0.77491 1.20376 1.22109 1.18801 1.47836 1.47807 1.12318 1.21953 1.21952 1.00982 0.81626 1.01329 1.17903 0.79630 0.85939 0.82445 1.90765 1.58515 1.16824 1.76278 1.20598 0.99509 0.83654 0.96555 1.22961 1.01679 1.01920 0.96499 1.20429 1.01740 0.94372 0.95380 1.22236 0.98809 0.96684 1.02166 1.23017 0.97011 0.98870 0.83670 1.86418 1.84281 1.20352 1.30386 0.92388 0.93059 0.94760 0.92452 0.92909 0.91176 0.90029 0.84627 0.90667 0.90107 0.90271 0.90454 0.87784 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 8.66 37.16 0.32 -3.23 16 2 C 0.23 5.67 2.22 -69.08 -0.15 5.52 16 3 H 0.06 1.72 5.96 -51.93 -0.31 1.41 16 4 C -0.53 -14.99 8.95 -34.44 -0.31 -15.30 16 5 H 0.08 2.45 7.89 -52.49 -0.41 2.03 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 8 Si 0.88 22.16 24.37 -169.99 -4.14 18.01 16 9 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.57 -12.61 2.75 -176.51 -0.49 -13.10 16 13 C 0.08 1.52 8.47 59.84 0.51 2.03 16 14 C 0.55 12.02 7.61 -12.49 -0.10 11.93 16 15 O -0.54 -13.42 15.39 5.28 0.08 -13.34 16 16 C 0.04 0.75 6.42 -37.73 -0.24 0.51 16 17 C -0.21 -3.09 9.54 -36.35 -0.35 -3.43 16 18 C -0.08 -0.85 6.22 -27.88 -0.17 -1.02 16 19 C -0.16 -1.48 6.23 -26.38 -0.16 -1.64 16 20 C 0.05 0.49 7.07 37.39 0.26 0.76 16 21 O -0.30 -4.39 6.09 -18.19 -0.11 -4.50 16 22 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 23 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.07 1.25 6.44 -51.93 -0.33 0.92 16 28 H 0.08 1.27 5.33 -52.12 -0.28 0.99 16 29 H 0.14 2.15 7.30 -52.49 -0.38 1.77 16 30 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 276.21 15.07 4.16 4.16 Total: -1.00 -32.90 276.21 -5.01 -37.91 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.80 Total: -0.74 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.49 Total: -1.80 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.29 Total: -39.70 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.03 Total: -17.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.90 -5.01 -37.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.134 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds