Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47731 * 2 1 4 4 C 1.50700 * 109.47230 * 120.00543 * 2 1 3 5 5 H 1.07995 * 120.00385 * 119.99655 * 4 2 1 6 6 C 1.37883 * 119.99630 * 299.99521 * 4 2 1 7 7 N 1.31519 * 119.99543 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00148 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47278 * 89.99917 * 8 6 4 10 10 H 1.48504 * 109.47160 * 210.00061 * 8 6 4 11 11 H 1.48496 * 109.47117 * 329.99986 * 8 6 4 12 12 N 1.46506 * 109.46642 * 240.00058 * 2 1 3 13 13 C 1.46496 * 120.00092 * 300.00091 * 12 2 1 14 14 C 1.34773 * 119.99706 * 120.00274 * 12 2 1 15 15 O 1.21599 * 120.00101 * 1.56027 * 14 12 2 16 16 C 1.47491 * 119.99800 * 181.55799 * 14 12 2 17 17 C 1.32407 * 118.47855 * 172.85417 * 16 14 12 18 18 C 1.50458 * 122.28750 * 180.40894 * 17 16 14 19 19 C 1.53232 * 109.45428 * 342.43511 * 18 17 16 20 20 C 1.53442 * 108.25588 * 47.15205 * 19 18 17 21 21 O 1.35498 * 118.47961 * 352.83299 * 16 14 12 22 22 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46726 * 299.99772 * 1 2 3 24 24 H 1.08998 * 109.47304 * 59.99616 * 1 2 3 25 25 H 0.97004 * 119.99387 * 179.97438 * 7 6 4 26 26 H 1.09009 * 109.47139 * 263.54480 * 13 12 2 27 27 H 1.08999 * 109.47107 * 23.54619 * 13 12 2 28 28 H 1.08996 * 109.47284 * 143.54976 * 13 12 2 29 29 H 1.07998 * 118.85406 * 0.38508 * 17 16 14 30 30 H 1.09009 * 109.47276 * 102.42893 * 18 17 16 31 31 H 1.09008 * 109.47435 * 222.43378 * 18 17 16 32 32 H 1.09004 * 109.70548 * 166.85039 * 19 18 17 33 33 H 1.09007 * 109.70603 * 287.42706 * 19 18 17 34 34 H 1.09003 * 109.69588 * 177.35639 * 20 19 18 35 35 H 1.08996 * 109.68332 * 56.77328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9761 1.9950 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0182 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.1103 1.1199 -1.8768 16 6 3.2562 -0.7205 -3.3048 17 6 3.8934 -0.0110 -4.2234 18 6 4.3946 -0.6201 -5.5046 19 6 4.4506 -2.1443 -5.3574 20 6 3.1271 -2.6167 -4.7413 21 8 3.0104 -2.0466 -3.4347 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.9033 -0.5282 4.4375 26 1 2.4709 -2.7349 -1.0734 27 1 0.7473 -2.3304 -0.8887 28 1 1.5113 -2.2578 -2.4947 29 1 4.0587 1.0416 -4.0470 30 1 3.7198 -0.3583 -6.3198 31 1 5.3924 -0.2390 -5.7222 32 1 4.5849 -2.6035 -6.3369 33 1 5.2794 -2.4204 -4.7054 34 1 3.1230 -3.7043 -4.6692 35 1 2.2945 -2.2860 -5.3621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = -66.239225 kcal Electronic energy + Delta-G solvation = -17740.902201 eV Core-core repulsion = 14932.401411 eV Total energy + Delta-G solvation = -2808.500790 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68438 -39.99473 -37.47587 -35.15161 -34.52625 -32.87328 -31.81411 -27.83054 -27.22174 -26.69868 -25.27155 -23.22339 -20.90789 -19.71430 -18.99612 -18.19589 -17.81699 -17.20165 -16.83080 -16.22788 -15.74849 -15.22154 -14.95210 -14.84912 -14.53182 -14.28461 -14.14555 -13.91272 -13.60395 -13.47993 -13.06517 -12.78750 -12.52122 -12.09182 -12.00283 -11.66555 -11.60022 -11.48471 -11.38219 -10.84522 -10.78612 -9.72533 -9.22665 -8.37138 -6.42727 0.40503 1.25161 1.34696 1.44013 2.01116 2.19851 2.26385 2.50779 2.97445 3.60400 3.85614 4.01395 4.21208 4.39471 4.41183 4.43012 4.51432 4.56541 4.64185 4.67604 4.82351 4.85754 4.96976 4.98870 5.07233 5.21908 5.26038 5.32182 5.36696 5.45312 5.65617 6.11810 6.39690 6.57909 6.67573 7.11295 7.26319 8.79234 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044057 B = 0.006541 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.394520 B = 4279.886904 C = 4470.696805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.227 3.773 3 H 0.033 0.967 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.250 1.250 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.581 5.581 13 C 0.088 3.912 14 C 0.542 3.458 15 O -0.588 6.588 16 C 0.025 3.975 17 C -0.185 4.185 18 C -0.082 4.082 19 C -0.157 4.157 20 C 0.040 3.960 21 O -0.315 6.315 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.270 0.730 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -3.984 -20.471 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.124 3.876 3 H 0.051 0.949 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.771 3.229 9 H -0.175 1.175 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.309 5.309 13 C -0.053 4.053 14 C 0.331 3.669 15 O -0.472 6.472 16 C -0.022 4.022 17 C -0.207 4.207 18 C -0.119 4.119 19 C -0.195 4.195 20 C -0.034 4.034 21 O -0.231 6.231 22 H 0.090 0.910 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.763 -3.590 -19.985 20.320 hybrid contribution -0.030 0.712 0.839 1.101 sum -0.793 -2.877 -19.147 19.378 Atomic orbital electron populations 1.22312 0.96087 1.02489 1.00181 1.19089 0.92238 0.93441 0.82802 0.94876 1.21327 1.32037 1.13153 0.90328 0.94164 1.25693 0.97155 0.99691 0.95107 1.70012 1.47020 1.42156 0.98631 0.85925 0.79906 0.79839 0.77252 1.17472 1.22016 1.18641 1.47926 1.48136 1.13640 1.21208 1.22092 1.00390 0.79330 1.03489 1.18686 0.78713 0.85793 0.83697 1.90717 1.59938 1.18813 1.77712 1.19892 1.02043 0.85093 0.95216 1.23312 0.98785 1.01034 0.97524 1.20604 1.02880 0.95169 0.93213 1.22255 0.97763 0.95713 1.03730 1.23435 0.98167 1.00025 0.81784 1.86297 1.84612 1.18706 1.33435 0.90953 0.93566 0.92336 0.92124 0.94144 0.91018 0.86779 0.86410 0.88095 0.88494 0.86690 0.91680 0.85302 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.55 8.66 71.98 0.62 -5.92 16 2 C 0.23 11.58 2.22 44.24 0.10 11.68 16 3 H 0.03 1.88 5.96 -2.39 -0.01 1.87 16 4 C -0.53 -31.26 8.95 25.60 0.23 -31.04 16 5 H 0.04 2.61 7.89 -2.91 -0.02 2.59 16 6 C 0.02 1.32 5.45 84.66 0.46 1.78 16 7 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 8 Si 0.94 45.92 24.37 68.60 1.67 47.59 16 9 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.26 -12.58 6.53 99.48 0.65 -11.94 16 12 N -0.58 -26.08 2.75 -830.62 -2.29 -28.37 16 13 C 0.09 3.20 8.47 127.77 1.08 4.28 16 14 C 0.54 23.98 7.61 86.68 0.66 24.64 16 15 O -0.59 -30.13 15.39 -4.03 -0.06 -30.19 16 16 C 0.02 0.83 6.42 23.60 0.15 0.98 16 17 C -0.18 -5.18 9.54 24.50 0.23 -4.95 16 18 C -0.08 -1.39 6.22 29.85 0.19 -1.20 16 19 C -0.16 -2.24 6.23 30.82 0.19 -2.05 16 20 C 0.04 0.65 7.07 72.13 0.51 1.16 16 21 O -0.31 -8.65 6.09 -87.99 -0.54 -9.19 16 22 H 0.07 2.85 6.67 -2.39 -0.02 2.83 16 23 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.07 2.52 6.44 -2.39 -0.02 2.50 16 28 H 0.11 3.36 5.33 -5.36 -0.03 3.34 16 29 H 0.12 3.72 7.30 -2.91 -0.02 3.70 16 30 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -74.97 276.21 4.50 -70.47 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.99 Total: 9.03 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.43 Total: -0.65 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.99 Total: -87.06 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.60 Total: -39.38 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -74.97 4.50 -70.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.233 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds