Wall clock time and date at job start Sun Mar 29 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47383 * 89.97223 * 8 7 6 10 10 C 1.46902 * 111.00209 * 293.95925 * 9 8 7 11 11 C 1.46902 * 111.00596 * 169.99865 * 9 8 7 12 12 C 1.50695 * 109.47215 * 190.00209 * 11 9 8 13 13 H 1.07990 * 120.00640 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99563 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00251 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47053 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46935 * 120.00524 * 16 14 12 19 19 H 1.48505 * 109.47163 * 240.00278 * 16 14 12 20 20 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 21 21 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 22 22 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 23 23 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 25 25 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 26 26 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 28 28 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 29 29 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 30 30 H 1.08995 * 109.47444 * 59.99305 * 10 9 8 31 31 H 1.09001 * 109.47228 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.46536 * 299.99577 * 10 9 8 33 33 H 1.09004 * 109.46886 * 310.00460 * 11 9 8 34 34 H 1.08997 * 109.46638 * 69.99569 * 11 9 8 35 35 H 0.97005 * 120.00307 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 7 2.9596 -4.4200 3.2637 10 6 1.9557 -4.1818 4.3094 11 6 3.7525 -5.6209 3.5589 12 6 2.8663 -6.8377 3.4891 13 1 1.8190 -6.7300 3.2491 14 6 3.3930 -8.0888 3.7308 15 7 4.6686 -8.2202 4.0226 16 14 2.2944 -9.5972 3.6451 17 1 0.9105 -9.1827 3.3013 18 1 2.8063 -10.5239 2.6036 19 1 2.2932 -10.2843 4.9616 20 8 2.8035 -1.8104 1.2544 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 4.6251 -3.4868 2.3870 29 1 4.2579 -2.9674 4.0495 30 1 1.3369 -3.3286 4.0315 31 1 1.3274 -5.0658 4.4181 32 1 2.4578 -3.9740 5.2543 33 1 4.5562 -5.7143 2.8284 34 1 4.1784 -5.5382 4.5588 35 1 5.0391 -9.1003 4.1930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:06 Heat of formation + Delta-G solvation = 32.038520 kcal Electronic energy + Delta-G solvation = -16902.133859 eV Core-core repulsion = 14130.187463 eV Total energy + Delta-G solvation = -2771.946396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.98543 -36.94297 -36.02239 -35.81109 -32.74759 -30.78226 -27.63368 -27.48379 -27.01698 -24.53032 -24.02393 -22.11283 -20.86510 -20.48217 -17.14789 -17.07118 -16.47991 -15.44714 -15.05236 -14.78163 -14.40152 -14.24138 -13.96707 -13.40769 -12.65984 -12.50132 -12.23447 -12.13004 -12.00755 -11.86257 -11.58170 -11.55160 -11.44243 -11.23953 -10.95457 -10.78423 -10.60119 -10.55494 -10.00591 -9.39345 -9.24779 -8.51299 -7.51614 -6.10249 -4.11886 1.37301 2.43122 2.59312 3.27901 3.35489 3.40596 3.90842 4.36560 4.44014 4.69471 4.72205 4.88356 4.98593 5.25426 5.26500 5.33922 5.44922 5.52892 5.55742 5.64038 5.75399 5.77683 5.93020 5.95645 6.04475 6.11172 6.28752 6.71361 7.08364 7.17538 7.65560 7.88453 8.01635 8.36993 8.54099 8.94968 9.52621 11.00703 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.004683 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.439441 B = 5977.142874 C = 6196.202307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.144 4.144 4 C 0.150 3.850 5 N -0.286 5.286 6 N -0.295 5.295 7 C 0.196 3.804 8 C 0.141 3.859 9 N -0.537 5.537 10 C 0.034 3.966 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 O -0.217 6.217 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.021 0.979 33 H 0.035 0.965 34 H -0.001 1.001 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 15.422 -7.672 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.061 4.061 5 N -0.133 5.133 6 N -0.142 5.142 7 C -0.016 4.016 8 C 0.011 3.989 9 N -0.263 5.263 10 C -0.115 4.115 11 C 0.070 3.930 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 O -0.095 6.095 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.017 0.983 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.648 15.829 -7.037 17.936 hybrid contribution 0.426 -1.481 -0.227 1.558 sum -4.221 14.348 -7.265 16.627 Atomic orbital electron populations 1.21862 0.91947 1.03133 1.03339 1.19666 0.96906 0.95156 0.89678 1.21855 1.01531 0.93368 1.03408 1.27905 0.93746 0.86251 0.98223 1.74244 1.19092 1.21515 0.98477 1.74407 1.10119 1.02889 1.26765 1.28270 0.98192 0.98519 0.76571 1.20578 0.92632 0.85631 1.00093 1.62167 1.15917 1.01897 1.46339 1.22306 0.95754 1.01413 0.91992 1.19818 0.92942 0.84828 0.95443 1.21136 0.96161 0.90317 1.47174 0.91682 1.24974 0.95153 0.99133 0.95219 1.69957 1.12078 1.23728 1.47910 0.86409 0.80725 0.82511 0.77605 1.19635 1.20935 1.21004 1.84818 1.54339 1.38904 1.31462 0.91134 0.90791 0.91953 0.88234 0.91124 0.92204 0.90786 0.87951 0.90526 0.93410 0.90209 0.96065 0.94725 0.98306 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 4 C 0.15 2.23 6.99 -12.94 -0.09 2.14 16 5 N -0.29 -4.89 12.22 32.55 0.40 -4.50 16 6 N -0.29 -5.48 11.51 32.55 0.37 -5.11 16 7 C 0.20 3.52 7.10 -12.94 -0.09 3.43 16 8 C 0.14 2.54 5.59 -4.98 -0.03 2.51 16 9 N -0.54 -11.64 4.74 -245.83 -1.17 -12.81 16 10 C 0.03 0.69 9.18 60.07 0.55 1.24 16 11 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 12 C -0.51 -14.06 8.46 -34.44 -0.29 -14.35 16 13 H 0.07 1.80 7.12 -52.49 -0.37 1.42 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 16 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 O -0.22 -3.69 10.87 5.38 0.06 -3.64 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 1.70 7.93 -51.93 -0.41 1.28 16 29 H 0.08 1.30 8.12 -51.93 -0.42 0.87 16 30 H 0.05 0.94 6.74 -51.93 -0.35 0.59 16 31 H 0.08 1.72 6.76 -51.93 -0.35 1.36 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 34 H 0.00 -0.02 8.12 -51.93 -0.42 -0.45 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -31.04 298.90 -5.07 -36.12 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.26 Total: -4.93 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 0.30 Total: -0.67 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.34 Total: -47.72 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: 0.06 Total: -3.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.04 -5.07 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.156 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds