Wall clock time and date at job start Sun Mar 29 2020 22:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47383 * 89.97223 * 8 7 6 10 10 C 1.46902 * 111.00209 * 293.95925 * 9 8 7 11 11 C 1.46902 * 111.00596 * 169.99865 * 9 8 7 12 12 C 1.50695 * 109.47215 * 190.00209 * 11 9 8 13 13 H 1.07990 * 120.00640 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99563 * 179.97438 * 12 11 9 15 15 N 1.31512 * 120.00251 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47053 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46935 * 120.00524 * 16 14 12 19 19 H 1.48505 * 109.47163 * 240.00278 * 16 14 12 20 20 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 21 21 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 22 22 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 23 23 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 25 25 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 26 26 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 28 28 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 29 29 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 30 30 H 1.08995 * 109.47444 * 59.99305 * 10 9 8 31 31 H 1.09001 * 109.47228 * 179.97438 * 10 9 8 32 32 H 1.09004 * 109.46536 * 299.99577 * 10 9 8 33 33 H 1.09004 * 109.46886 * 310.00460 * 11 9 8 34 34 H 1.08997 * 109.46638 * 69.99569 * 11 9 8 35 35 H 0.97005 * 120.00307 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 7 2.9596 -4.4200 3.2637 10 6 1.9557 -4.1818 4.3094 11 6 3.7525 -5.6209 3.5589 12 6 2.8663 -6.8377 3.4891 13 1 1.8190 -6.7300 3.2491 14 6 3.3930 -8.0888 3.7308 15 7 4.6686 -8.2202 4.0226 16 14 2.2944 -9.5972 3.6451 17 1 0.9105 -9.1827 3.3013 18 1 2.8063 -10.5239 2.6036 19 1 2.2932 -10.2843 4.9616 20 8 2.8035 -1.8104 1.2544 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 4.6251 -3.4868 2.3870 29 1 4.2579 -2.9674 4.0495 30 1 1.3369 -3.3286 4.0315 31 1 1.3274 -5.0658 4.4181 32 1 2.4578 -3.9740 5.2543 33 1 4.5562 -5.7143 2.8284 34 1 4.1784 -5.5382 4.5588 35 1 5.0391 -9.1003 4.1930 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:05 Heat of formation + Delta-G solvation = 7.409135 kcal Electronic energy + Delta-G solvation = -16903.201870 eV Core-core repulsion = 14130.187463 eV Total energy + Delta-G solvation = -2773.014406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.29776 -38.60695 -37.25280 -36.81286 -34.79163 -32.22524 -29.39733 -28.67380 -28.13685 -26.19453 -25.29429 -23.69585 -22.23994 -21.80231 -18.66282 -18.48941 -18.16784 -16.89975 -16.50952 -16.22475 -15.99434 -15.71465 -15.24460 -14.37981 -14.15869 -13.88918 -13.59887 -13.53358 -13.11634 -13.07339 -13.03070 -12.82314 -12.72206 -12.65189 -12.38216 -12.33000 -12.27692 -11.99002 -11.74643 -11.38911 -10.66411 -10.56938 -9.28211 -8.22476 -6.31770 0.08119 1.19198 1.28076 1.41673 1.42936 1.55814 2.39889 2.71676 3.10695 3.20133 3.41521 3.70027 3.99763 4.06327 4.08169 4.19888 4.34781 4.43223 4.49820 4.60036 4.65887 4.76286 4.86808 4.87617 4.98606 5.02703 5.11887 5.18853 5.27876 5.32093 5.59760 5.94413 6.09802 6.40168 6.81526 7.22037 7.37438 8.88713 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042840 B = 0.004683 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.439441 B = 5977.142874 C = 6196.202307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 C -0.139 4.139 4 C 0.167 3.833 5 N -0.313 5.313 6 N -0.309 5.309 7 C 0.185 3.815 8 C 0.144 3.856 9 N -0.547 5.547 10 C 0.043 3.957 11 C 0.209 3.791 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.278 1.278 20 O -0.226 6.226 21 H 0.058 0.942 22 H 0.108 0.892 23 H 0.049 0.951 24 H 0.120 0.880 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.020 0.980 34 H -0.021 1.021 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 16.053 -9.063 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 C -0.197 4.197 4 C -0.045 4.045 5 N -0.158 5.158 6 N -0.156 5.156 7 C -0.027 4.027 8 C 0.015 3.985 9 N -0.273 5.273 10 C -0.105 4.105 11 C 0.083 3.917 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.204 1.204 20 O -0.105 6.105 21 H 0.078 0.922 22 H 0.127 0.873 23 H 0.068 0.932 24 H 0.138 0.862 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.038 0.962 34 H -0.003 1.003 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.583 16.492 -8.425 19.343 hybrid contribution 0.694 -1.558 0.143 1.712 sum -4.889 14.934 -8.282 17.763 Atomic orbital electron populations 1.21881 0.90852 1.02683 1.04522 1.20146 0.97650 0.95935 0.88063 1.21866 1.01339 0.91963 1.04495 1.29065 0.91368 0.84859 0.99187 1.74208 1.20248 1.21982 0.99375 1.74349 1.10312 1.03296 1.27685 1.28032 0.98909 0.98718 0.77066 1.20558 0.92402 0.84431 1.01146 1.62006 1.16307 1.02346 1.46612 1.22189 0.95387 1.00921 0.92002 1.19476 0.92455 0.85975 0.93762 1.21421 0.96246 0.91573 1.47269 0.92174 1.25813 0.96482 1.02140 0.94668 1.70058 1.13675 1.24666 1.48593 0.85364 0.78934 0.78672 0.77822 1.19118 1.20277 1.20356 1.84829 1.54890 1.39770 1.30990 0.92248 0.87324 0.93200 0.86182 0.92259 0.92531 0.87463 0.86712 0.89406 0.92665 0.91579 0.95630 0.96167 1.00291 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 2 C 0.00 0.03 3.39 -11.54 -0.04 0.00 16 3 C -0.14 -1.85 9.18 71.98 0.66 -1.19 16 4 C 0.17 4.75 6.99 88.34 0.62 5.37 16 5 N -0.31 -10.50 12.22 -165.50 -2.02 -12.53 16 6 N -0.31 -11.43 11.51 -165.50 -1.90 -13.33 16 7 C 0.18 6.58 7.10 88.34 0.63 7.21 16 8 C 0.14 5.18 5.59 85.56 0.48 5.65 16 9 N -0.55 -23.82 4.74 -931.66 -4.42 -28.24 16 10 C 0.04 1.78 9.18 127.69 1.17 2.96 16 11 C 0.21 10.69 4.72 85.56 0.40 11.10 16 12 C -0.53 -29.30 8.46 25.60 0.22 -29.08 16 13 H 0.06 3.34 7.12 -2.92 -0.02 3.32 16 14 C 0.01 0.42 5.46 84.66 0.46 0.89 16 15 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 16 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 O -0.23 -7.50 10.87 -3.68 -0.04 -7.54 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 3.78 7.93 -2.39 -0.02 3.76 16 29 H 0.09 2.95 8.12 -2.39 -0.02 2.94 16 30 H 0.05 2.17 6.74 -2.39 -0.02 2.16 16 31 H 0.07 2.87 6.76 -2.39 -0.02 2.85 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.02 1.08 7.93 -2.38 -0.02 1.07 16 34 H -0.02 -1.12 8.12 -2.39 -0.02 -1.14 16 35 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -66.22 298.90 0.25 -65.97 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.07 Total: 2.59 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.26 Total: 1.41 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -8.06 Total: -108.07 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.04 Total: -7.54 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.22 0.25 -65.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.382 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds