Wall clock time and date at job start Sun Mar 29 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.46424 * 269.97585 * 8 7 6 10 10 C 1.46899 * 111.00215 * 293.94688 * 9 8 7 11 11 C 1.46905 * 110.99463 * 170.00186 * 9 8 7 12 12 C 1.50700 * 109.46793 * 189.99949 * 11 9 8 13 13 H 1.07996 * 120.00531 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00047 * 180.02562 * 12 11 9 15 15 N 1.31517 * 119.99752 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00175 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47369 * 119.99537 * 16 14 12 19 19 H 1.48503 * 109.47041 * 239.99681 * 16 14 12 20 20 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 25 25 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 28 28 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 29 29 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 30 30 H 1.09003 * 109.46585 * 60.00235 * 10 9 8 31 31 H 1.08994 * 109.47302 * 180.02562 * 10 9 8 32 32 H 1.08997 * 109.47104 * 300.00834 * 10 9 8 33 33 H 1.08998 * 109.46976 * 309.99203 * 11 9 8 34 34 H 1.08993 * 109.47383 * 69.99583 * 11 9 8 35 35 H 0.97006 * 119.99995 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 7 7.2484 0.0606 1.7053 10 6 6.2760 -0.6211 2.5700 11 6 8.5952 0.0155 2.2901 12 6 9.0816 -1.4105 2.3218 13 1 8.4529 -2.2040 1.9456 14 6 10.3288 -1.7024 2.8320 15 7 11.0942 -0.7362 3.2906 16 14 10.9314 -3.4700 2.8720 17 1 9.8892 -4.3613 2.3021 18 1 12.1758 -3.5871 2.0701 19 1 11.2080 -3.8670 4.2759 20 7 4.3425 1.4489 1.0850 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 -0.8900 27 1 1.6764 1.9564 0.8900 28 1 7.6235 1.9590 0.8873 29 1 6.6593 1.9596 2.3836 30 1 5.3018 -0.6343 2.0813 31 1 6.6057 -1.6440 2.7516 32 1 6.1993 -0.0906 3.5191 33 1 9.2740 0.6175 1.6859 34 1 8.5641 0.4115 3.3051 35 1 11.9718 -0.9414 3.6492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177192314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:57 Heat of formation + Delta-G solvation = 59.235124 kcal Electronic energy + Delta-G solvation = -16785.969485 eV Core-core repulsion = 14015.202422 eV Total energy + Delta-G solvation = -2770.767063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.32206 -37.01068 -36.44402 -34.38797 -32.84521 -31.91920 -28.21836 -27.81726 -27.02840 -24.38723 -23.40889 -22.19311 -21.14051 -20.26011 -17.81965 -17.19057 -16.46338 -15.40863 -14.97476 -14.82333 -14.64527 -14.29416 -13.95053 -13.65536 -12.87847 -12.41589 -12.32000 -12.03658 -11.96005 -11.69119 -11.60166 -11.31159 -11.07302 -10.98442 -10.94200 -10.76034 -10.72649 -10.53980 -10.02596 -9.68937 -9.32127 -8.50764 -7.52539 -6.09724 -4.11212 1.37753 2.39775 3.09775 3.28637 3.36407 3.41405 3.75637 4.18093 4.38584 4.76972 4.79712 4.92196 4.97393 5.24147 5.27553 5.38555 5.45597 5.54164 5.60830 5.71487 5.81773 5.93609 6.01899 6.06878 6.08767 6.19044 6.26877 6.68970 7.08422 7.17262 7.65776 7.88291 8.01656 8.37022 8.40156 8.95622 9.53309 11.01204 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037658 B = 0.004658 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.353904 B = 6009.713058 C = 6393.893443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.025 4.025 4 C 0.164 3.836 5 N -0.393 5.393 6 O 0.080 5.920 7 C 0.215 3.785 8 C 0.137 3.863 9 N -0.535 5.535 10 C 0.035 3.965 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.488 5.488 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.036 0.964 34 H -0.001 1.001 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.671 4.594 -4.396 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.064 4.064 4 C -0.109 4.109 5 N -0.102 5.102 6 O 0.024 5.976 7 C -0.006 4.006 8 C 0.007 3.993 9 N -0.261 5.261 10 C -0.114 4.114 11 C 0.070 3.930 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.211 1.211 20 N -0.223 5.223 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.085 4.394 -5.273 17.488 hybrid contribution 0.622 -0.498 0.877 1.185 sum -15.463 3.896 -4.396 16.541 Atomic orbital electron populations 1.21742 0.94875 1.02081 1.01956 1.21494 0.96219 0.95072 1.03086 1.19964 0.83137 0.99025 1.04263 1.25789 1.00057 1.01049 0.83960 1.74586 0.89637 1.21784 1.24201 1.85293 1.21926 1.65277 1.25139 1.29019 0.96827 0.92999 0.81772 1.20631 0.87696 0.94824 0.96182 1.62188 1.05513 1.09649 1.48792 1.22297 0.94468 1.00595 0.94029 1.19823 0.81622 0.98565 0.93022 1.21138 1.00994 0.92483 1.40160 0.91671 1.24971 0.96599 0.97610 0.95305 1.69959 1.10362 1.31727 1.41614 0.86413 0.78779 0.84491 0.77588 1.19645 1.20922 1.21064 1.71920 0.99821 1.21281 1.29251 0.92303 0.92401 0.92573 0.91624 0.91154 0.89431 0.88868 0.87424 0.90703 0.93478 0.90242 0.96177 0.94555 0.98333 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 3 C -0.03 -0.27 5.84 -27.88 -0.16 -0.44 16 4 C 0.16 2.49 7.47 -156.37 -1.17 1.32 16 5 N -0.39 -6.55 12.16 30.90 0.38 -6.17 16 6 O 0.08 1.39 11.31 18.10 0.20 1.59 16 7 C 0.21 3.61 7.12 -13.06 -0.09 3.52 16 8 C 0.14 2.32 5.59 -4.97 -0.03 2.29 16 9 N -0.53 -11.12 4.74 -245.82 -1.17 -12.29 16 10 C 0.03 0.68 9.18 60.06 0.55 1.23 16 11 C 0.19 4.76 4.72 -4.97 -0.02 4.74 16 12 C -0.51 -13.83 8.46 -34.44 -0.29 -14.12 16 13 H 0.07 1.77 7.12 -52.49 -0.37 1.40 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 N -0.49 -8.08 10.87 -9.87 -0.11 -8.19 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.11 1.64 7.93 -51.93 -0.41 1.23 16 29 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.05 0.87 6.76 -51.93 -0.35 0.52 16 31 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.04 0.93 7.93 -51.93 -0.41 0.52 16 34 H 0.00 -0.03 8.12 -51.93 -0.42 -0.45 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -29.60 299.08 -6.83 -36.44 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -5.26 Total: -4.87 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.10 Total: -2.14 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.16 Total: -51.69 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.20 Total: 1.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.60 -6.83 -36.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177192314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.671 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds