Wall clock time and date at job start Sun Mar 29 2020 22:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28954 * 90.02383 * 4 3 2 6 6 O 1.21296 * 110.25471 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.80899 * 359.97438 * 6 5 4 8 8 C 1.50703 * 126.55107 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.46424 * 269.97585 * 8 7 6 10 10 C 1.46899 * 111.00215 * 293.94688 * 9 8 7 11 11 C 1.46905 * 110.99463 * 170.00186 * 9 8 7 12 12 C 1.50700 * 109.46793 * 189.99949 * 11 9 8 13 13 H 1.07996 * 120.00531 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00047 * 180.02562 * 12 11 9 15 15 N 1.31517 * 119.99752 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00175 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47369 * 119.99537 * 16 14 12 19 19 H 1.48503 * 109.47041 * 239.99681 * 16 14 12 20 20 N 1.31124 * 106.89716 * 359.77126 * 7 6 5 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 25 25 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 28 28 H 1.09004 * 109.46902 * 29.97089 * 8 7 6 29 29 H 1.08992 * 109.47575 * 149.97859 * 8 7 6 30 30 H 1.09003 * 109.46585 * 60.00235 * 10 9 8 31 31 H 1.08994 * 109.47302 * 180.02562 * 10 9 8 32 32 H 1.08997 * 109.47104 * 300.00834 * 10 9 8 33 33 H 1.08998 * 109.46976 * 309.99203 * 11 9 8 34 34 H 1.08993 * 109.47383 * 69.99583 * 11 9 8 35 35 H 0.97006 * 119.99995 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7109 7 6 5.5695 1.4440 0.6227 8 6 6.8362 1.4453 1.4391 9 7 7.2484 0.0606 1.7053 10 6 6.2760 -0.6211 2.5700 11 6 8.5952 0.0155 2.2901 12 6 9.0816 -1.4105 2.3218 13 1 8.4529 -2.2040 1.9456 14 6 10.3288 -1.7024 2.8320 15 7 11.0942 -0.7362 3.2906 16 14 10.9314 -3.4700 2.8720 17 1 9.8892 -4.3613 2.3021 18 1 12.1758 -3.5871 2.0701 19 1 11.2080 -3.8670 4.2759 20 7 4.3425 1.4489 1.0850 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 -0.8900 27 1 1.6764 1.9564 0.8900 28 1 7.6235 1.9590 0.8873 29 1 6.6593 1.9596 2.3836 30 1 5.3018 -0.6343 2.0813 31 1 6.6057 -1.6440 2.7516 32 1 6.1993 -0.0906 3.5191 33 1 9.2740 0.6175 1.6859 34 1 8.5641 0.4115 3.3051 35 1 11.9718 -0.9414 3.6492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177192314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:56 Heat of formation + Delta-G solvation = 38.962330 kcal Electronic energy + Delta-G solvation = -16786.848579 eV Core-core repulsion = 14015.202422 eV Total energy + Delta-G solvation = -2771.646157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.59645 -38.63320 -37.54533 -35.52753 -34.69119 -33.31700 -29.78513 -28.94210 -28.59827 -26.17697 -24.63813 -23.36871 -22.53486 -21.60401 -19.12145 -18.68328 -18.26246 -16.86495 -16.41589 -16.20045 -15.86687 -15.80783 -15.44997 -14.49104 -14.43812 -13.92884 -13.66742 -13.39449 -13.10566 -13.01543 -12.88423 -12.68794 -12.60012 -12.51952 -12.34314 -12.11857 -12.03440 -11.95615 -11.67273 -11.35990 -10.95429 -10.59749 -9.22700 -8.19660 -6.28172 0.06259 1.15797 1.43162 1.44945 1.57182 1.77397 2.42341 2.60988 3.01912 3.14207 3.31900 3.85256 4.00607 4.04719 4.18575 4.27945 4.42659 4.51064 4.62149 4.64614 4.71831 4.80827 4.87687 4.91548 5.04082 5.17009 5.17543 5.21310 5.25149 5.38291 5.63410 5.99173 6.14725 6.44997 6.85449 7.11713 7.40821 8.91367 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037658 B = 0.004658 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.353904 B = 6009.713058 C = 6393.893443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.026 4.026 4 C 0.169 3.831 5 N -0.408 5.408 6 O 0.067 5.933 7 C 0.212 3.788 8 C 0.140 3.860 9 N -0.546 5.546 10 C 0.044 3.956 11 C 0.208 3.792 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.279 1.279 20 N -0.496 5.496 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.022 0.978 34 H -0.020 1.020 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 4.339 -4.580 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.064 4.064 4 C -0.104 4.104 5 N -0.119 5.119 6 O 0.013 5.987 7 C -0.009 4.009 8 C 0.010 3.990 9 N -0.272 5.272 10 C -0.105 4.105 11 C 0.083 3.917 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.204 1.204 20 N -0.231 5.231 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.041 0.959 34 H -0.002 1.002 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.453 4.144 -5.467 18.753 hybrid contribution 0.966 -0.373 0.915 1.382 sum -16.487 3.771 -4.551 17.515 Atomic orbital electron populations 1.21709 0.92644 1.02752 1.02993 1.21460 0.98079 0.94191 1.01804 1.20241 0.80348 0.99886 1.05942 1.26546 1.01623 0.99118 0.83074 1.74592 0.89572 1.22930 1.24846 1.85278 1.22458 1.65739 1.25216 1.28885 0.96860 0.93311 0.81803 1.20644 0.88404 0.92805 0.97134 1.62004 1.04296 1.12352 1.48575 1.22190 0.94408 0.99609 0.94266 1.19473 0.83397 0.96996 0.91812 1.21439 1.01265 0.93601 1.40034 0.92195 1.25785 0.96784 1.01650 0.94889 1.70056 1.10798 1.33743 1.42380 0.85398 0.78213 0.79617 0.77767 1.19167 1.20441 1.20430 1.71943 0.99876 1.21416 1.29876 0.91870 0.91443 0.91455 0.92806 0.92570 0.87627 0.87269 0.86018 0.89288 0.92385 0.91851 0.95650 0.95946 1.00204 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -2.17 5.92 30.60 0.18 -1.99 16 3 C -0.03 -0.50 5.84 29.85 0.17 -0.33 16 4 C 0.17 4.89 7.47 138.46 1.03 5.92 16 5 N -0.41 -13.19 12.16 -60.32 -0.73 -13.92 16 6 O 0.07 2.26 11.31 74.82 0.85 3.10 16 7 C 0.21 6.96 7.12 88.38 0.63 7.59 16 8 C 0.14 4.63 5.59 85.56 0.48 5.11 16 9 N -0.55 -22.62 4.74 -931.65 -4.42 -27.04 16 10 C 0.04 1.69 9.18 127.69 1.17 2.86 16 11 C 0.21 10.36 4.72 85.56 0.40 10.76 16 12 C -0.53 -28.68 8.46 25.60 0.22 -28.46 16 13 H 0.06 3.27 7.12 -2.91 -0.02 3.25 16 14 C 0.01 0.41 5.46 84.65 0.46 0.88 16 15 N -0.93 -53.67 13.29 21.45 0.28 -53.38 16 16 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 N -0.50 -15.77 10.87 -303.19 -3.30 -19.07 16 21 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 3.65 7.93 -2.38 -0.02 3.63 16 29 H 0.09 2.72 8.12 -2.39 -0.02 2.71 16 30 H 0.06 2.10 6.76 -2.39 -0.02 2.09 16 31 H 0.06 2.64 6.76 -2.39 -0.02 2.62 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.02 1.17 7.93 -2.39 -0.02 1.15 16 34 H -0.02 -1.04 8.12 -2.39 -0.02 -1.06 16 35 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -62.09 299.08 1.24 -60.85 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.07 Total: 2.88 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.47 Total: 1.23 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -8.16 Total: -113.41 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.85 Total: 3.10 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -62.09 1.24 -60.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177192314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.816 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds