Wall clock time and date at job start Sun Mar 29 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46889 * 89.99689 * 5 4 3 7 7 C 1.46902 * 111.00377 * 293.95480 * 6 5 4 8 8 C 1.46898 * 111.00095 * 170.00397 * 6 5 4 9 9 C 1.53000 * 109.47641 * 190.00245 * 8 6 5 10 10 C 1.52996 * 109.47433 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47161 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99780 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00061 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00123 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46814 * 119.99994 * 15 13 11 18 18 H 1.48499 * 109.47001 * 239.99909 * 15 13 11 19 19 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 20 20 O 1.21305 * 110.24918 * 359.70797 * 19 4 3 21 21 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 24 24 H 1.08999 * 109.47602 * 209.99851 * 5 4 3 25 25 H 1.09001 * 109.47155 * 330.00055 * 5 4 3 26 26 H 1.09002 * 109.46671 * 60.00471 * 7 6 5 27 27 H 1.09003 * 109.47505 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47434 * 300.00321 * 7 6 5 29 29 H 1.09003 * 109.47142 * 310.00293 * 8 6 5 30 30 H 1.09003 * 109.47330 * 70.00034 * 8 6 5 31 31 H 1.09003 * 109.46891 * 300.00201 * 9 8 6 32 32 H 1.09003 * 109.46930 * 59.99545 * 9 8 6 33 33 H 1.08999 * 109.46875 * 299.99851 * 10 9 8 34 34 H 1.09003 * 109.47354 * 59.99902 * 10 9 8 35 35 H 0.96995 * 120.00616 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 5.2225 1.6547 1.3851 7 6 4.2501 2.5198 2.0663 8 6 6.5696 2.2388 1.4312 9 6 7.0625 2.2708 2.8793 10 6 8.4657 2.8786 2.9272 11 6 8.9509 2.9106 4.3536 12 1 8.3215 2.5346 5.1466 13 6 10.1983 3.4199 4.6463 14 7 10.9649 3.8774 3.6805 15 14 10.7994 3.4602 6.4145 16 1 9.7564 2.8906 7.3050 17 1 12.0430 2.6574 6.5329 18 1 11.0768 4.8641 6.8111 19 7 3.4646 -0.7242 0.0015 20 8 2.3029 -1.0736 0.0073 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 5.5986 0.8367 -0.5130 25 1 4.6350 2.3333 -0.5142 26 1 3.2757 2.0314 2.0789 27 1 4.5787 2.7004 3.0898 28 1 4.1740 3.4690 1.5359 29 1 7.2485 1.6345 0.8296 30 1 6.5392 3.2540 1.0353 31 1 6.3836 2.8752 3.4809 32 1 7.0929 1.2556 3.2752 33 1 9.1443 2.2738 2.3257 34 1 8.4357 3.8937 2.5312 35 1 11.8426 4.2353 3.8863 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181704746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:16 Heat of formation + Delta-G solvation = 61.162315 kcal Electronic energy + Delta-G solvation = -16486.594841 eV Core-core repulsion = 13715.911347 eV Total energy + Delta-G solvation = -2770.683494 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.67533 -37.91844 -35.82277 -34.00566 -33.30963 -31.33266 -29.23343 -28.05166 -27.09025 -24.71388 -23.53823 -22.05878 -20.85336 -19.89030 -18.28625 -17.50073 -16.32328 -15.51544 -15.33612 -14.90667 -14.66429 -14.33618 -13.78738 -13.61544 -13.51109 -12.78926 -12.41562 -12.25971 -11.92393 -11.74204 -11.65070 -11.48719 -11.20760 -11.10192 -10.81665 -10.54493 -10.49324 -10.01248 -9.60449 -9.32995 -9.03726 -8.32604 -8.20532 -5.97710 -3.99554 1.05692 2.09586 2.69992 3.32985 3.40251 3.44941 3.47978 3.94598 4.23381 4.49336 4.78251 4.90040 4.90810 5.19402 5.30231 5.38196 5.41207 5.50544 5.61886 5.71027 5.83241 5.88101 5.97043 6.13892 6.29544 6.68646 6.73129 7.07287 7.23709 7.30233 7.70776 7.85195 8.02802 8.11286 8.46233 9.07762 9.64419 11.13838 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059481 B = 0.003642 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.628852 B = 7686.597973 C = 7794.203457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.480 5.480 4 C 0.186 3.814 5 C 0.141 3.859 6 N -0.539 5.539 7 C 0.024 3.976 8 C 0.058 3.942 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.369 5.369 20 O 0.075 5.925 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.806 -6.308 -9.145 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 N -0.216 5.216 4 C -0.088 4.088 5 C 0.012 3.988 6 N -0.264 5.264 7 C -0.124 4.124 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.076 5.076 20 O 0.016 5.984 21 H 0.118 0.882 22 H 0.121 0.879 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.808 -6.763 -8.934 22.758 hybrid contribution 0.265 0.803 0.527 0.996 sum -19.543 -5.960 -8.407 22.093 Atomic orbital electron populations 1.20355 0.80414 1.05799 1.05211 1.28807 0.98885 0.81011 0.96549 1.71901 1.00453 1.28979 1.20216 1.25706 0.94874 0.88188 0.99992 1.20320 0.89225 0.97008 0.92275 1.62030 1.03815 1.47985 1.12558 1.22438 0.95420 0.94533 0.99989 1.22350 0.86839 0.97001 1.00713 1.21669 0.99303 1.01118 0.92172 1.19079 0.89697 0.95731 0.97078 1.21288 1.00870 1.40157 0.93253 0.92625 1.25030 0.96884 0.95485 0.97149 1.69974 1.10140 1.41932 1.31582 0.86540 0.78741 0.77609 0.85154 1.19724 1.21019 1.21050 1.74670 0.96844 1.15864 1.20181 1.85308 1.11619 1.35807 1.65690 0.88228 0.87854 0.88523 0.88082 0.91674 0.92190 0.90377 0.95360 0.90888 0.94747 0.93294 0.92541 0.96531 0.96738 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.17 1.67 8.51 -13.05 -0.11 1.56 16 3 N -0.48 -6.20 10.86 -9.86 -0.11 -6.31 16 4 C 0.19 2.68 6.82 -156.37 -1.07 1.61 16 5 C 0.14 2.00 5.59 -4.98 -0.03 1.97 16 6 N -0.54 -8.78 4.75 -244.37 -1.16 -9.94 16 7 C 0.02 0.37 9.17 60.07 0.55 0.92 16 8 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 9 C -0.10 -2.24 5.08 -26.73 -0.14 -2.37 16 10 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 N -0.37 -5.45 12.16 30.90 0.38 -5.08 16 20 O 0.08 0.91 11.31 18.10 0.20 1.12 16 21 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.10 1.35 7.93 -51.93 -0.41 0.93 16 25 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.06 0.89 6.74 -51.93 -0.35 0.54 16 27 H 0.08 1.23 6.30 -51.93 -0.33 0.91 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 30 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.05 1.03 6.47 -51.93 -0.34 0.69 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -33.27 298.07 -6.64 -39.91 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -5.18 Total: -6.10 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.98 Total: -8.50 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.16 Total: -47.93 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.12 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.27 -6.64 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181704746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.075 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds