Wall clock time and date at job start Sun Mar 29 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46889 * 89.99689 * 5 4 3 7 7 C 1.46902 * 111.00377 * 293.95480 * 6 5 4 8 8 C 1.46898 * 111.00095 * 170.00397 * 6 5 4 9 9 C 1.53000 * 109.47641 * 190.00245 * 8 6 5 10 10 C 1.52996 * 109.47433 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47161 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99780 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00061 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00123 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46814 * 119.99994 * 15 13 11 18 18 H 1.48499 * 109.47001 * 239.99909 * 15 13 11 19 19 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 20 20 O 1.21305 * 110.24918 * 359.70797 * 19 4 3 21 21 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 24 24 H 1.08999 * 109.47602 * 209.99851 * 5 4 3 25 25 H 1.09001 * 109.47155 * 330.00055 * 5 4 3 26 26 H 1.09002 * 109.46671 * 60.00471 * 7 6 5 27 27 H 1.09003 * 109.47505 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47434 * 300.00321 * 7 6 5 29 29 H 1.09003 * 109.47142 * 310.00293 * 8 6 5 30 30 H 1.09003 * 109.47330 * 70.00034 * 8 6 5 31 31 H 1.09003 * 109.46891 * 300.00201 * 9 8 6 32 32 H 1.09003 * 109.46930 * 59.99545 * 9 8 6 33 33 H 1.08999 * 109.46875 * 299.99851 * 10 9 8 34 34 H 1.09003 * 109.47354 * 59.99902 * 10 9 8 35 35 H 0.96995 * 120.00616 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 5.2225 1.6547 1.3851 7 6 4.2501 2.5198 2.0663 8 6 6.5696 2.2388 1.4312 9 6 7.0625 2.2708 2.8793 10 6 8.4657 2.8786 2.9272 11 6 8.9509 2.9106 4.3536 12 1 8.3215 2.5346 5.1466 13 6 10.1983 3.4199 4.6463 14 7 10.9649 3.8774 3.6805 15 14 10.7994 3.4602 6.4145 16 1 9.7564 2.8906 7.3050 17 1 12.0430 2.6574 6.5329 18 1 11.0768 4.8641 6.8111 19 7 3.4646 -0.7242 0.0015 20 8 2.3029 -1.0736 0.0073 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 5.5986 0.8367 -0.5130 25 1 4.6350 2.3333 -0.5142 26 1 3.2757 2.0314 2.0789 27 1 4.5787 2.7004 3.0898 28 1 4.1740 3.4690 1.5359 29 1 7.2485 1.6345 0.8296 30 1 6.5392 3.2540 1.0353 31 1 6.3836 2.8752 3.4809 32 1 7.0929 1.2556 3.2752 33 1 9.1443 2.2738 2.3257 34 1 8.4357 3.8937 2.5312 35 1 11.8426 4.2353 3.8863 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181704746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:16 Heat of formation + Delta-G solvation = 36.821601 kcal Electronic energy + Delta-G solvation = -16487.650333 eV Core-core repulsion = 13715.911347 eV Total energy + Delta-G solvation = -2771.738986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.63180 -39.20058 -36.87477 -35.67578 -34.52734 -33.18769 -29.93952 -29.27831 -28.70039 -26.33830 -24.65135 -23.56470 -21.95851 -21.57250 -19.25805 -18.51069 -18.43572 -16.81712 -16.70553 -16.35854 -16.00978 -15.61601 -15.12778 -14.47480 -14.20524 -14.13691 -13.74922 -13.65530 -13.31712 -13.15698 -12.86684 -12.77499 -12.69951 -12.51753 -12.38805 -12.25180 -12.07434 -11.46667 -11.39704 -11.16301 -10.87136 -10.55828 -9.48242 -8.20909 -6.31630 0.19866 1.11891 1.39366 1.39812 1.53390 1.98197 2.40209 2.55535 3.01237 3.04777 3.12290 3.93868 4.03063 4.15062 4.23975 4.36345 4.52057 4.55653 4.60806 4.67435 4.67720 4.71456 4.85607 4.97031 5.02445 5.04427 5.17018 5.22589 5.50811 5.71867 5.84746 5.89173 5.93349 6.26063 6.84984 7.20648 7.37498 8.91229 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059481 B = 0.003642 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.628852 B = 7686.597973 C = 7794.203457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.184 3.816 3 N -0.506 5.506 4 C 0.173 3.827 5 C 0.143 3.857 6 N -0.549 5.549 7 C 0.030 3.970 8 C 0.070 3.930 9 C -0.090 4.090 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.057 0.943 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.276 1.276 19 N -0.397 5.397 20 O 0.074 5.926 21 H 0.124 0.876 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.048 0.952 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 -6.620 -8.689 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 N -0.241 5.241 4 C -0.100 4.100 5 C 0.014 3.986 6 N -0.275 5.275 7 C -0.118 4.118 8 C -0.057 4.057 9 C -0.128 4.128 10 C -0.011 4.011 11 C -0.581 4.581 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.202 1.202 19 N -0.106 5.106 20 O 0.014 5.986 21 H 0.142 0.858 22 H 0.131 0.869 23 H 0.139 0.861 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.012 0.988 34 H 0.013 0.987 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.583 -7.075 -8.484 24.246 hybrid contribution 0.699 0.874 0.335 1.169 sum -20.884 -6.201 -8.149 23.259 Atomic orbital electron populations 1.20764 0.76242 1.07448 1.07212 1.29924 1.00556 0.79654 0.93413 1.71903 1.00178 1.30065 1.21912 1.25712 0.95443 0.88261 1.00616 1.20312 0.89688 0.97707 0.90930 1.61909 1.03161 1.48081 1.14312 1.22379 0.95203 0.94787 0.99407 1.22068 0.88024 0.97536 0.98097 1.21406 0.96558 0.99995 0.94818 1.18963 0.92104 0.94461 0.95579 1.21710 1.01483 1.40434 0.94452 0.92467 1.25975 0.97025 0.94846 1.01987 1.70094 1.10646 1.42546 1.34032 0.85396 0.78294 0.77980 0.79364 1.18753 1.20318 1.20180 1.74648 0.98321 1.16242 1.21380 1.85265 1.11167 1.36336 1.65788 0.85766 0.86872 0.86070 0.87690 0.90500 0.91779 0.91280 0.94569 0.90668 0.94315 0.92964 0.93363 0.98789 0.98727 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 71.24 0.75 0.46 16 2 C 0.18 3.30 8.51 88.38 0.75 4.05 16 3 N -0.51 -12.36 10.86 -303.17 -3.29 -15.66 16 4 C 0.17 4.85 6.82 138.46 0.94 5.80 16 5 C 0.14 3.95 5.59 85.56 0.48 4.43 16 6 N -0.55 -17.60 4.75 -927.05 -4.41 -22.00 16 7 C 0.03 0.89 9.17 127.69 1.17 2.06 16 8 C 0.07 2.48 4.96 86.30 0.43 2.91 16 9 C -0.09 -3.87 5.08 30.59 0.16 -3.72 16 10 C 0.03 1.43 4.97 29.85 0.15 1.58 16 11 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 15 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 N -0.40 -11.53 12.16 -60.29 -0.73 -12.27 16 20 O 0.07 1.70 11.31 74.82 0.85 2.54 16 21 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 22 H 0.11 0.43 8.14 -2.39 -0.02 0.42 16 23 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 24 H 0.10 2.76 7.93 -2.39 -0.02 2.74 16 25 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 26 H 0.06 1.84 6.74 -2.39 -0.02 1.82 16 27 H 0.07 2.14 6.30 -2.39 -0.02 2.12 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 2.62 7.93 -2.39 -0.02 2.61 16 30 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.05 2.20 6.47 -2.39 -0.02 2.18 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.85 298.07 1.32 -70.53 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.07 Total: 0.48 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.52 Total: -13.54 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -8.15 Total: -107.17 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.85 Total: 2.54 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.85 1.32 -70.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181704746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.354 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds