Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.36930 * 120.00457 * 84.99745 * 4 2 1 6 6 H 1.07998 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00279 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00241 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47000 * 59.99894 * 9 7 5 11 11 H 1.48496 * 109.46976 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47013 * 300.00030 * 9 7 5 13 13 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 14 14 N 1.31138 * 126.55417 * 254.99944 * 13 2 1 15 15 C 1.34495 * 105.61509 * 179.97438 * 14 13 2 16 16 C 1.50700 * 126.28274 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47002 * 60.00309 * 16 15 14 18 18 C 1.53003 * 109.46681 * 180.02562 * 16 15 14 19 19 C 1.52995 * 109.47323 * 300.00157 * 16 15 14 20 20 N 1.29942 * 107.42747 * 359.97438 * 15 14 13 21 21 O 1.21306 * 110.25137 * 0.02562 * 20 15 14 22 22 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 24 24 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 25 25 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 26 26 H 0.97001 * 120.00271 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47090 * 59.99531 * 17 16 15 28 28 H 1.08998 * 109.46995 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47167 * 300.00007 * 17 16 15 30 30 H 1.08995 * 109.47502 * 60.00197 * 18 16 15 31 31 H 1.09006 * 109.46694 * 180.02562 * 18 16 15 32 32 H 1.08997 * 109.47052 * 299.99827 * 18 16 15 33 33 H 1.09003 * 109.47116 * 60.00441 * 19 16 15 34 34 H 1.09006 * 109.47155 * 179.97438 * 19 16 15 35 35 H 1.09004 * 109.47279 * 299.99873 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6121 -0.6615 -3.5091 8 7 2.9261 -1.9384 -3.4498 9 14 2.7911 0.2706 -5.1180 10 1 3.7462 1.3930 -4.9362 11 1 3.2999 -0.6478 -6.1682 12 1 1.4689 0.8074 -5.5288 13 6 2.0323 -0.7104 1.2303 14 7 2.5498 -0.1520 2.2981 15 6 2.8507 -1.1669 3.1277 16 6 3.4724 -1.0466 4.4952 17 6 2.5635 -0.2088 5.3967 18 6 3.6469 -2.4410 5.1005 19 6 4.8386 -0.3682 4.3764 20 7 2.5069 -2.2702 2.5335 21 8 2.0348 -2.0300 1.4422 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 2.2490 -1.6318 -1.1527 26 1 3.2494 -2.3956 -4.2419 27 1 1.5902 -0.6921 5.4813 28 1 3.0130 -0.1221 6.3859 29 1 2.4396 0.7845 4.9653 30 1 4.2946 -3.0375 4.4581 31 1 4.0962 -2.3539 6.0898 32 1 2.6738 -2.9247 5.1850 33 1 4.7147 0.6252 3.9450 34 1 5.2881 -0.2808 5.3656 35 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185167197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = 62.176214 kcal Electronic energy + Delta-G solvation = -17260.447555 eV Core-core repulsion = 14489.808027 eV Total energy + Delta-G solvation = -2770.639528 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.08916 -37.57918 -36.07174 -34.33971 -32.41216 -30.74251 -28.56438 -27.39310 -27.35885 -24.62295 -24.13605 -23.09547 -21.23356 -18.99996 -17.61017 -17.54255 -16.76151 -15.20531 -14.88427 -14.53935 -14.23232 -13.93564 -13.69852 -12.80679 -12.68569 -12.51718 -12.30784 -12.14460 -11.76456 -11.71030 -11.50977 -11.39506 -11.14988 -10.96157 -10.91781 -10.86126 -10.74092 -10.45950 -10.22314 -9.87742 -9.46700 -9.07556 -7.20863 -5.88877 -3.22395 1.63855 2.64600 3.35362 3.41482 3.43636 3.44956 3.81502 4.27429 4.51581 4.82783 4.84439 5.00915 5.39618 5.42247 5.51504 5.56948 5.58508 5.68175 5.73492 5.77920 5.79485 5.90678 5.96958 5.99417 6.19008 6.19471 6.27446 6.30748 6.42039 6.54579 6.81220 7.57349 8.24732 8.63626 9.38203 9.84831 10.21402 11.32522 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040520 B = 0.005393 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.845265 B = 5191.060777 C = 5313.591476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.262 3.738 3 H 0.092 0.908 4 N -0.716 5.716 5 C -0.253 4.253 6 H 0.077 0.923 7 C -0.004 4.004 8 N -0.925 5.925 9 Si 0.913 3.087 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.205 3.795 14 N -0.492 5.492 15 C 0.171 3.829 16 C 0.027 3.973 17 C -0.136 4.136 18 C -0.138 4.138 19 C -0.137 4.137 20 N -0.393 5.393 21 O 0.077 5.923 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.391 0.609 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 2.727 15.298 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.150 3.850 3 H 0.110 0.890 4 N -0.359 5.359 5 C -0.384 4.384 6 H 0.095 0.905 7 C -0.201 4.201 8 N -0.572 5.572 9 Si 0.743 3.257 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.209 1.209 13 C -0.016 4.016 14 N -0.226 5.226 15 C -0.103 4.103 16 C 0.025 3.975 17 C -0.194 4.194 18 C -0.196 4.196 19 C -0.196 4.196 20 N -0.102 5.102 21 O 0.022 5.978 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.225 0.775 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.465 2.358 15.731 15.913 hybrid contribution 0.158 0.077 -1.125 1.138 sum -0.306 2.435 14.606 14.811 Atomic orbital electron populations 1.22481 0.96198 1.02297 1.01561 1.18945 0.93119 0.94431 0.78537 0.89008 1.42423 1.78243 1.10918 1.04304 1.19153 1.38493 0.94288 0.86418 0.90484 1.24814 1.00990 0.95984 0.98331 1.69672 1.49355 1.08727 1.29399 0.86192 0.77966 0.78605 0.82929 1.21011 1.21572 1.20926 1.29905 0.93379 0.80772 0.97545 1.71802 1.18045 1.30641 1.02132 1.25647 1.00847 0.84229 0.99533 1.18901 0.95357 0.97541 0.85724 1.21835 0.98761 1.00217 0.98589 1.21817 1.02676 0.94561 1.00536 1.21847 0.94260 1.01313 1.02138 1.74572 1.16547 1.24178 0.94891 1.85296 1.58254 1.27474 1.26820 0.92493 0.93569 0.90529 0.77471 0.93076 0.92620 0.91527 0.91373 0.91969 0.91600 0.92088 0.91347 0.91532 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.47 37.16 0.35 -2.46 16 2 C 0.26 5.20 3.43 -69.09 -0.24 4.96 16 3 H 0.09 1.79 8.08 -51.93 -0.42 1.37 16 4 N -0.72 -17.51 5.11 -54.56 -0.28 -17.79 16 5 C -0.25 -6.70 9.93 -15.06 -0.15 -6.85 16 6 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 7 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 8 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 9 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.21 4.02 7.26 -13.05 -0.09 3.92 16 14 N -0.49 -9.17 11.55 -9.87 -0.11 -9.28 16 15 C 0.17 2.95 6.40 -156.38 -1.00 1.95 16 16 C 0.03 0.35 0.99 -155.66 -0.15 0.19 16 17 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 18 C -0.14 -1.59 7.97 37.16 0.30 -1.30 16 19 C -0.14 -1.63 8.45 37.15 0.31 -1.31 16 20 N -0.39 -7.47 11.47 30.90 0.35 -7.12 16 21 O 0.08 1.57 11.13 18.09 0.20 1.77 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.39 10.34 7.65 -40.81 -0.31 10.03 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -29.49 300.64 -5.41 -34.90 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.35 Total: 5.28 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.46 Total: -2.27 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.69 Total: -60.75 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.20 Total: 1.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.49 -5.41 -34.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185167197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.074 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds