Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.36930 * 120.00457 * 84.99745 * 4 2 1 6 6 H 1.07998 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00279 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00241 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47000 * 59.99894 * 9 7 5 11 11 H 1.48496 * 109.46976 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47013 * 300.00030 * 9 7 5 13 13 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 14 14 N 1.31138 * 126.55417 * 254.99944 * 13 2 1 15 15 C 1.34495 * 105.61509 * 179.97438 * 14 13 2 16 16 C 1.50700 * 126.28274 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47002 * 60.00309 * 16 15 14 18 18 C 1.53003 * 109.46681 * 180.02562 * 16 15 14 19 19 C 1.52995 * 109.47323 * 300.00157 * 16 15 14 20 20 N 1.29942 * 107.42747 * 359.97438 * 15 14 13 21 21 O 1.21306 * 110.25137 * 0.02562 * 20 15 14 22 22 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 24 24 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 25 25 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 26 26 H 0.97001 * 120.00271 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47090 * 59.99531 * 17 16 15 28 28 H 1.08998 * 109.46995 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47167 * 300.00007 * 17 16 15 30 30 H 1.08995 * 109.47502 * 60.00197 * 18 16 15 31 31 H 1.09006 * 109.46694 * 180.02562 * 18 16 15 32 32 H 1.08997 * 109.47052 * 299.99827 * 18 16 15 33 33 H 1.09003 * 109.47116 * 60.00441 * 19 16 15 34 34 H 1.09006 * 109.47155 * 179.97438 * 19 16 15 35 35 H 1.09004 * 109.47279 * 299.99873 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6121 -0.6615 -3.5091 8 7 2.9261 -1.9384 -3.4498 9 14 2.7911 0.2706 -5.1180 10 1 3.7462 1.3930 -4.9362 11 1 3.2999 -0.6478 -6.1682 12 1 1.4689 0.8074 -5.5288 13 6 2.0323 -0.7104 1.2303 14 7 2.5498 -0.1520 2.2981 15 6 2.8507 -1.1669 3.1277 16 6 3.4724 -1.0466 4.4952 17 6 2.5635 -0.2088 5.3967 18 6 3.6469 -2.4410 5.1005 19 6 4.8386 -0.3682 4.3764 20 7 2.5069 -2.2702 2.5335 21 8 2.0348 -2.0300 1.4422 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 2.2490 -1.6318 -1.1527 26 1 3.2494 -2.3956 -4.2419 27 1 1.5902 -0.6921 5.4813 28 1 3.0130 -0.1221 6.3859 29 1 2.4396 0.7845 4.9653 30 1 4.2946 -3.0375 4.4581 31 1 4.0962 -2.3539 6.0898 32 1 2.6738 -2.9247 5.1850 33 1 4.7147 0.6252 3.9450 34 1 5.2881 -0.2808 5.3656 35 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185167197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = 41.979232 kcal Electronic energy + Delta-G solvation = -17261.323362 eV Core-core repulsion = 14489.808027 eV Total energy + Delta-G solvation = -2771.515334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.56555 -38.69720 -37.78178 -35.79147 -34.23084 -32.35098 -30.31198 -28.32628 -28.25685 -26.37513 -25.49192 -24.81532 -22.67375 -20.30138 -19.52456 -19.04766 -18.23260 -16.77806 -16.36933 -16.14111 -15.44073 -15.20170 -14.99454 -14.56200 -14.30644 -13.57826 -13.46522 -13.30209 -13.14384 -12.81585 -12.71667 -12.70262 -12.60948 -12.50439 -12.45279 -12.24770 -12.09359 -11.94964 -11.79399 -11.75887 -11.11753 -10.87442 -9.20764 -7.97220 -5.31643 0.11928 1.21981 1.52104 1.54926 1.60939 1.84791 2.44571 2.62662 2.99596 3.38743 3.70179 3.84089 3.87516 3.98034 4.17541 4.35538 4.41132 4.64401 4.66727 4.68573 4.77851 4.82747 4.88288 4.89326 4.93274 4.99705 5.05013 5.19917 5.28853 5.33477 5.37273 5.50562 6.18835 7.13212 7.27924 7.88837 8.15962 9.25551 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040520 B = 0.005393 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.845265 B = 5191.060777 C = 5313.591476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.262 3.738 3 H 0.099 0.901 4 N -0.731 5.731 5 C -0.249 4.249 6 H 0.092 0.908 7 C -0.068 4.068 8 N -0.969 5.969 9 Si 0.979 3.021 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.271 1.271 13 C 0.199 3.801 14 N -0.494 5.494 15 C 0.177 3.823 16 C 0.019 3.981 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.134 4.134 20 N -0.409 5.409 21 O 0.054 5.946 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.376 0.624 26 H 0.253 0.747 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 4.248 17.005 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.151 3.849 3 H 0.117 0.883 4 N -0.373 5.373 5 C -0.380 4.380 6 H 0.110 0.890 7 C -0.261 4.261 8 N -0.618 5.618 9 Si 0.807 3.193 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.197 1.197 13 C -0.023 4.023 14 N -0.229 5.229 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.188 4.188 18 C -0.192 4.192 19 C -0.192 4.192 20 N -0.122 5.122 21 O 0.003 5.997 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.208 0.792 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.576 3.921 17.450 17.895 hybrid contribution 0.183 -0.363 -1.491 1.545 sum -0.394 3.558 15.960 16.356 Atomic orbital electron populations 1.22322 0.93664 1.02348 1.02970 1.19127 0.94595 0.94110 0.77095 0.88296 1.42557 1.78824 1.10447 1.05470 1.19615 1.36468 0.94866 0.87030 0.89013 1.25656 1.01828 0.96791 1.01793 1.69845 1.51591 1.10506 1.29839 0.85136 0.78286 0.77167 0.78669 1.20231 1.22582 1.19694 1.29813 0.93704 0.80835 0.97914 1.71829 1.17863 1.31038 1.02141 1.26579 0.99170 0.83234 1.00656 1.19314 0.96108 0.99125 0.83741 1.21827 0.98357 0.99010 0.99653 1.21817 1.02251 0.93184 1.01919 1.21852 0.93364 1.00081 1.03907 1.74583 1.17694 1.25045 0.94836 1.85278 1.59049 1.27773 1.27625 0.93150 0.90721 0.90447 0.79154 0.93828 0.93061 0.88116 0.92230 0.93527 0.88078 0.92828 0.92409 0.87906 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.47 71.98 0.68 -4.35 16 2 C 0.26 10.25 3.43 44.24 0.15 10.41 16 3 H 0.10 3.74 8.08 -2.39 -0.02 3.72 16 4 N -0.73 -36.13 5.11 -326.52 -1.67 -37.80 16 5 C -0.25 -13.14 9.93 84.03 0.83 -12.30 16 6 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 7 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 8 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 9 Si 0.98 44.47 29.55 68.60 2.03 46.50 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 C 0.20 7.77 7.26 88.38 0.64 8.42 16 14 N -0.49 -18.09 11.55 -303.18 -3.50 -21.59 16 15 C 0.18 5.99 6.40 138.46 0.89 6.88 16 16 C 0.02 0.46 0.99 -52.93 -0.05 0.40 16 17 C -0.13 -2.49 8.46 71.98 0.61 -1.88 16 18 C -0.13 -2.80 7.97 71.98 0.57 -2.22 16 19 C -0.13 -2.87 8.45 71.98 0.61 -2.26 16 20 N -0.41 -15.65 11.47 -60.30 -0.69 -16.34 16 21 O 0.05 2.23 11.13 74.81 0.83 3.06 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.38 20.56 7.65 -92.70 -0.71 19.85 16 26 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -64.04 300.64 3.05 -60.99 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.37 Total: 23.66 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.40 Total: -0.21 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -5.58 Total: -134.01 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.83 Total: 3.06 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.04 3.05 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185167197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.969 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds