Wall clock time and date at job start Sun Mar 29 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00579 * 2 1 4 4 H 1.07997 * 120.00265 * 154.65461 * 3 2 1 5 5 C 1.38811 * 119.99585 * 334.65731 * 3 2 1 6 6 N 1.31618 * 120.00250 * 3.93120 * 5 3 2 7 7 Si 1.86801 * 119.99800 * 183.92607 * 5 3 2 8 8 H 1.48497 * 109.47501 * 265.00413 * 7 5 3 9 9 H 1.48500 * 109.47069 * 25.00387 * 7 5 3 10 10 H 1.48500 * 109.47066 * 145.00049 * 7 5 3 11 11 C 1.46502 * 119.99843 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47238 * 269.99975 * 11 2 1 13 13 H 1.08994 * 110.37974 * 59.29504 * 12 11 2 14 14 C 1.54794 * 110.42214 * 181.68176 * 12 11 2 15 15 C 1.53804 * 101.72546 * 144.87766 * 14 12 11 16 16 C 1.52839 * 115.29825 * 114.85446 * 15 14 12 17 17 C 1.53951 * 86.79284 * 92.46337 * 16 15 14 18 18 C 1.52832 * 115.45306 * 215.42971 * 15 14 12 19 19 C 1.50424 * 105.85437 * 345.20887 * 15 14 12 20 20 O 1.20817 * 125.31200 * 177.51353 * 19 15 14 21 21 O 1.34394 * 109.38146 * 357.51758 * 19 15 14 22 22 H 1.09000 * 109.47469 * 84.46501 * 1 2 3 23 23 H 1.09001 * 109.47448 * 204.47320 * 1 2 3 24 24 H 1.09007 * 109.47047 * 324.46631 * 1 2 3 25 25 H 0.96999 * 120.00005 * 180.02562 * 6 5 3 26 26 H 1.09008 * 109.46765 * 29.99885 * 11 2 1 27 27 H 1.09003 * 109.47396 * 149.99603 * 11 2 1 28 28 H 1.09002 * 110.95788 * 263.08089 * 14 12 11 29 29 H 1.08994 * 110.96512 * 26.82245 * 14 12 11 30 30 H 1.09003 * 113.65740 * 206.93555 * 16 15 14 31 31 H 1.08995 * 113.66282 * 337.98586 * 16 15 14 32 32 H 1.09002 * 113.58168 * 270.12851 * 17 16 15 33 33 H 1.08998 * 113.66505 * 139.32972 * 17 16 15 34 34 H 1.09004 * 113.66241 * 22.15211 * 18 15 14 35 35 H 1.08995 * 113.66421 * 153.11045 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1517 1.2308 0.4004 5 6 1.5559 2.3302 -0.5146 6 7 0.3080 2.2935 -0.9313 7 14 2.5279 3.9221 -0.6155 8 1 2.2517 4.7480 0.5873 9 1 3.9789 3.6129 -0.6810 10 1 2.1261 4.6711 -1.8332 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 1 1.5089 -1.8342 1.9734 14 6 3.2628 -3.0297 1.4670 15 6 4.1434 -2.8315 2.7123 16 6 3.8730 -3.7991 3.8642 17 6 4.9712 -4.6916 3.2580 18 6 5.5524 -3.4166 2.6203 19 6 4.0579 -1.3676 3.0474 20 8 4.5866 -0.8360 3.9947 21 8 3.3016 -0.7432 2.1285 22 1 -0.3634 0.0991 -1.0229 23 1 -0.3634 -0.9353 0.4257 24 1 -0.3633 0.8363 0.5973 25 1 -0.1069 3.0931 -1.2912 26 1 1.6082 -2.0282 -0.5148 27 1 3.1498 -1.1383 -0.5144 28 1 2.6041 -3.8900 1.5859 29 1 3.8737 -3.1293 0.5699 30 1 4.1288 -3.3952 4.8438 31 1 2.8798 -4.2469 3.8353 32 1 4.5959 -5.4111 2.5302 33 1 5.6265 -5.1451 4.0016 34 1 5.9010 -3.5589 1.5974 35 1 6.2807 -2.9043 3.2489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191987031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:29 Heat of formation + Delta-G solvation = -35.692772 kcal Electronic energy + Delta-G solvation = -17705.387695 eV Core-core repulsion = 14898.211499 eV Total energy + Delta-G solvation = -2807.176196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23252 -37.75093 -37.25121 -35.29064 -31.93488 -30.44506 -27.71490 -26.00201 -25.83404 -24.66315 -22.33421 -21.41056 -20.52358 -18.74582 -17.12699 -16.47641 -16.25707 -15.53279 -15.25262 -14.82615 -14.26947 -13.55568 -13.47255 -13.09957 -12.90212 -12.80240 -12.48252 -11.89121 -11.63952 -11.42948 -11.30312 -11.11399 -10.83582 -10.68133 -10.56471 -10.49957 -10.21753 -10.02776 -9.90674 -9.81846 -9.51537 -8.43184 -6.72791 -5.67851 -3.15243 2.38389 3.44473 3.50531 3.53778 3.75358 4.05913 4.30862 4.40487 4.54813 4.59987 4.67281 4.94208 5.16352 5.34712 5.48628 5.50480 5.59466 5.68855 5.72069 5.73707 5.80665 5.87280 5.95213 6.02403 6.20535 6.27021 6.61748 6.76283 7.37544 7.49671 7.80573 7.86393 7.96042 8.47400 9.31238 9.89790 10.37711 11.37306 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.006692 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.996844 B = 4183.141719 C = 4627.626484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.244 4.244 4 H 0.074 0.926 5 C 0.002 3.998 6 N -0.915 5.915 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.279 1.279 10 H -0.291 1.291 11 C 0.153 3.847 12 C 0.061 3.939 13 H 0.083 0.917 14 C -0.128 4.128 15 C -0.160 4.160 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.111 4.111 19 C 0.488 3.512 20 O -0.470 6.470 21 O -0.311 6.311 22 H 0.028 0.972 23 H -0.011 1.011 24 H 0.054 0.946 25 H 0.251 0.749 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -15.378 4.809 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.373 4.373 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.561 5.561 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.204 1.204 10 H -0.217 1.217 11 C 0.024 3.976 12 C 0.002 3.998 13 H 0.101 0.899 14 C -0.166 4.166 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.172 4.172 18 C -0.148 4.148 19 C 0.328 3.672 20 O -0.355 6.355 21 O -0.226 6.226 22 H 0.046 0.954 23 H 0.008 0.992 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.625 -14.717 5.086 16.556 hybrid contribution 0.363 0.874 -0.003 0.947 sum 5.989 -13.843 5.083 15.916 Atomic orbital electron populations 1.20935 0.82298 0.95340 0.99517 1.43891 1.01943 1.00510 1.85714 1.19291 0.99289 0.86110 1.32618 0.90864 1.25144 0.96586 0.98787 0.98984 1.70083 1.11369 1.27871 1.46748 0.86220 0.79681 0.83519 0.77112 1.21551 1.20405 1.21687 1.20907 0.97375 0.89762 0.89588 1.25061 0.91503 0.84507 0.98681 0.89905 1.22816 0.98315 0.98926 0.96554 1.22771 1.00160 0.94538 0.98720 1.22715 0.99934 0.95476 0.96886 1.22876 0.97902 0.96297 1.00149 1.22691 0.93652 0.96281 1.02211 1.22792 0.76257 0.88079 0.80088 1.90618 1.46002 1.73705 1.25187 1.87374 1.50538 1.37577 1.47101 0.95375 0.99218 0.92759 0.93864 0.91892 0.92232 0.89031 0.89038 0.89173 0.90519 0.89727 0.91018 0.90373 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.94 59.84 0.54 4.54 16 2 N -0.60 -15.00 2.91 -181.12 -0.53 -15.53 16 3 C -0.24 -6.87 9.23 -15.06 -0.14 -7.01 16 4 H 0.07 2.11 7.51 -52.49 -0.39 1.71 16 5 C 0.00 0.06 5.38 -17.43 -0.09 -0.04 16 6 N -0.91 -26.96 10.13 55.49 0.56 -26.40 16 7 Si 0.90 22.78 29.56 -169.99 -5.02 17.75 16 8 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.15 2.93 5.34 -4.04 -0.02 2.91 16 12 C 0.06 1.03 3.81 -25.79 -0.10 0.93 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 14 C -0.13 -1.53 5.97 -25.37 -0.15 -1.68 16 15 C -0.16 -2.09 1.13 -155.55 -0.18 -2.26 16 16 C -0.11 -1.20 7.31 -26.32 -0.19 -1.39 16 17 C -0.13 -1.17 7.93 -25.75 -0.20 -1.37 16 18 C -0.11 -1.20 7.37 -26.32 -0.19 -1.40 16 19 C 0.49 8.99 7.83 35.87 0.28 9.27 16 20 O -0.47 -9.89 18.00 -18.37 -0.33 -10.22 16 21 O -0.31 -6.49 9.98 -39.33 -0.39 -6.89 16 22 H 0.03 0.73 7.43 -51.93 -0.39 0.35 16 23 H -0.01 -0.22 8.03 -51.93 -0.42 -0.64 16 24 H 0.05 1.47 7.04 -51.93 -0.37 1.11 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.06 1.04 8.07 -51.92 -0.42 0.62 16 27 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 28 H 0.09 0.86 7.83 -51.93 -0.41 0.45 16 29 H 0.09 1.00 7.73 -51.93 -0.40 0.60 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -32.69 288.78 -7.10 -39.78 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -5.28 Total: -5.35 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.45 Total: 2.49 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.04 Total: -41.93 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.72 Total: -17.11 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.69 -7.10 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191987031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.091 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds