Wall clock time and date at job start Sun Mar 29 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00579 * 2 1 4 4 H 1.07997 * 120.00265 * 154.65461 * 3 2 1 5 5 C 1.38811 * 119.99585 * 334.65731 * 3 2 1 6 6 N 1.31618 * 120.00250 * 3.93120 * 5 3 2 7 7 Si 1.86801 * 119.99800 * 183.92607 * 5 3 2 8 8 H 1.48497 * 109.47501 * 265.00413 * 7 5 3 9 9 H 1.48500 * 109.47069 * 25.00387 * 7 5 3 10 10 H 1.48500 * 109.47066 * 145.00049 * 7 5 3 11 11 C 1.46502 * 119.99843 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47238 * 269.99975 * 11 2 1 13 13 H 1.08994 * 110.37974 * 59.29504 * 12 11 2 14 14 C 1.54794 * 110.42214 * 181.68176 * 12 11 2 15 15 C 1.53804 * 101.72546 * 144.87766 * 14 12 11 16 16 C 1.52839 * 115.29825 * 114.85446 * 15 14 12 17 17 C 1.53951 * 86.79284 * 92.46337 * 16 15 14 18 18 C 1.52832 * 115.45306 * 215.42971 * 15 14 12 19 19 C 1.50424 * 105.85437 * 345.20887 * 15 14 12 20 20 O 1.20817 * 125.31200 * 177.51353 * 19 15 14 21 21 O 1.34394 * 109.38146 * 357.51758 * 19 15 14 22 22 H 1.09000 * 109.47469 * 84.46501 * 1 2 3 23 23 H 1.09001 * 109.47448 * 204.47320 * 1 2 3 24 24 H 1.09007 * 109.47047 * 324.46631 * 1 2 3 25 25 H 0.96999 * 120.00005 * 180.02562 * 6 5 3 26 26 H 1.09008 * 109.46765 * 29.99885 * 11 2 1 27 27 H 1.09003 * 109.47396 * 149.99603 * 11 2 1 28 28 H 1.09002 * 110.95788 * 263.08089 * 14 12 11 29 29 H 1.08994 * 110.96512 * 26.82245 * 14 12 11 30 30 H 1.09003 * 113.65740 * 206.93555 * 16 15 14 31 31 H 1.08995 * 113.66282 * 337.98586 * 16 15 14 32 32 H 1.09002 * 113.58168 * 270.12851 * 17 16 15 33 33 H 1.08998 * 113.66505 * 139.32972 * 17 16 15 34 34 H 1.09004 * 113.66241 * 22.15211 * 18 15 14 35 35 H 1.08995 * 113.66421 * 153.11045 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1517 1.2308 0.4004 5 6 1.5559 2.3302 -0.5146 6 7 0.3080 2.2935 -0.9313 7 14 2.5279 3.9221 -0.6155 8 1 2.2517 4.7480 0.5873 9 1 3.9789 3.6129 -0.6810 10 1 2.1261 4.6711 -1.8332 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 1 1.5089 -1.8342 1.9734 14 6 3.2628 -3.0297 1.4670 15 6 4.1434 -2.8315 2.7123 16 6 3.8730 -3.7991 3.8642 17 6 4.9712 -4.6916 3.2580 18 6 5.5524 -3.4166 2.6203 19 6 4.0579 -1.3676 3.0474 20 8 4.5866 -0.8360 3.9947 21 8 3.3016 -0.7432 2.1285 22 1 -0.3634 0.0991 -1.0229 23 1 -0.3634 -0.9353 0.4257 24 1 -0.3633 0.8363 0.5973 25 1 -0.1069 3.0931 -1.2912 26 1 1.6082 -2.0282 -0.5148 27 1 3.1498 -1.1383 -0.5144 28 1 2.6041 -3.8900 1.5859 29 1 3.8737 -3.1293 0.5699 30 1 4.1288 -3.3952 4.8438 31 1 2.8798 -4.2469 3.8353 32 1 4.5959 -5.4111 2.5302 33 1 5.6265 -5.1451 4.0016 34 1 5.9010 -3.5589 1.5974 35 1 6.2807 -2.9043 3.2489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191987031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:28 Heat of formation + Delta-G solvation = -55.730202 kcal Electronic energy + Delta-G solvation = -17706.256583 eV Core-core repulsion = 14898.211499 eV Total energy + Delta-G solvation = -2808.045085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44906 -38.86575 -38.74574 -37.16804 -33.72449 -31.96971 -29.09402 -27.89702 -26.81536 -26.06685 -23.68674 -22.87778 -21.94972 -19.85039 -18.90460 -17.90223 -17.74118 -16.98381 -16.71686 -16.15973 -15.70301 -15.18593 -14.95224 -14.82724 -14.24152 -13.89453 -13.61966 -13.26133 -13.19048 -12.92773 -12.79041 -12.53886 -12.36410 -12.30211 -12.08762 -11.98396 -11.85521 -11.51145 -11.37309 -11.23330 -10.80969 -10.58896 -8.74385 -7.83709 -5.31425 1.00675 1.41652 1.43179 1.52550 2.40238 2.49184 2.94024 3.30594 3.34768 3.49237 3.68287 3.71280 3.84385 4.05643 4.18333 4.32430 4.57036 4.73510 4.76551 4.77217 4.86029 4.92539 4.95284 5.00139 5.10967 5.13175 5.18262 5.44290 5.46960 5.68835 5.80553 6.02461 6.37813 6.46302 7.19055 7.89370 8.29160 9.19059 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.006692 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.996844 B = 4183.141719 C = 4627.626484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.620 5.620 3 C -0.245 4.245 4 H 0.060 0.940 5 C -0.052 4.052 6 N -0.939 5.939 7 Si 0.959 3.041 8 H -0.293 1.293 9 H -0.274 1.274 10 H -0.286 1.286 11 C 0.149 3.851 12 C 0.060 3.940 13 H 0.084 0.916 14 C -0.108 4.108 15 C -0.159 4.159 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.115 4.115 19 C 0.476 3.524 20 O -0.513 6.513 21 O -0.359 6.359 22 H 0.006 0.994 23 H 0.032 0.968 24 H 0.016 0.984 25 H 0.247 0.753 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -18.435 4.546 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.342 5.342 3 C -0.376 4.376 4 H 0.078 0.922 5 C -0.246 4.246 6 N -0.586 5.586 7 Si 0.788 3.212 8 H -0.220 1.220 9 H -0.199 1.199 10 H -0.212 1.212 11 C 0.022 3.978 12 C 0.002 3.998 13 H 0.102 0.898 14 C -0.146 4.146 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.152 4.152 19 C 0.320 3.680 20 O -0.401 6.401 21 O -0.276 6.276 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.198 -17.825 4.821 19.478 hybrid contribution 0.211 1.812 0.126 1.828 sum 6.408 -16.013 4.947 17.943 Atomic orbital electron populations 1.20643 0.82421 0.95908 0.97760 1.44110 1.02277 1.01674 1.86171 1.19396 0.98789 0.87845 1.31547 0.92223 1.25791 0.97534 1.01568 0.99729 1.70235 1.12297 1.28179 1.47938 0.85364 0.78671 0.80333 0.76802 1.21990 1.19934 1.21216 1.21197 0.97039 0.88138 0.91383 1.24973 0.92121 0.86282 0.96393 0.89787 1.22852 0.98021 0.97153 0.96563 1.22946 1.02339 0.90478 1.00310 1.22792 1.02023 0.95045 0.95238 1.22855 0.96562 0.95308 1.00390 1.22779 0.91991 0.97251 1.03217 1.23761 0.74851 0.90514 0.78922 1.90569 1.47382 1.75278 1.26906 1.87307 1.51551 1.40634 1.48067 0.97576 0.94975 0.96470 0.94359 0.88285 0.92761 0.84959 0.87386 0.90815 0.88424 0.87015 0.89776 0.88794 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.68 8.94 127.77 1.14 9.82 16 2 N -0.62 -30.90 2.91 -726.93 -2.11 -33.01 16 3 C -0.25 -14.06 9.23 84.03 0.78 -13.28 16 4 H 0.06 3.52 7.51 -2.91 -0.02 3.50 16 5 C -0.05 -3.04 5.38 84.86 0.46 -2.58 16 6 N -0.94 -56.57 10.13 21.65 0.22 -56.36 16 7 Si 0.96 47.79 29.56 68.60 2.03 49.81 16 8 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 9 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 C 0.15 5.42 5.34 86.38 0.46 5.88 16 12 C 0.06 1.88 3.81 31.21 0.12 2.00 16 13 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.11 -2.13 5.97 31.48 0.19 -1.94 16 15 C -0.16 -3.73 1.13 -52.86 -0.06 -3.79 16 16 C -0.11 -2.04 7.31 30.86 0.23 -1.82 16 17 C -0.11 -1.45 7.93 31.23 0.25 -1.20 16 18 C -0.11 -2.16 7.37 30.86 0.23 -1.93 16 19 C 0.48 17.63 7.83 71.15 0.56 18.19 16 20 O -0.51 -22.39 18.00 21.63 0.39 -22.00 16 21 O -0.36 -15.13 9.98 -53.36 -0.53 -15.66 16 22 H 0.01 0.31 7.43 -2.39 -0.02 0.29 16 23 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 24 H 0.02 0.93 7.04 -2.38 -0.02 0.91 16 25 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.10 2.89 8.07 -2.38 -0.02 2.87 16 27 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 28 H 0.13 1.61 7.83 -2.39 -0.02 1.59 16 29 H 0.11 1.82 7.73 -2.39 -0.02 1.80 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.36 7.96 -2.39 -0.02 1.34 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.47 7.97 -2.38 -0.02 1.45 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -74.75 288.78 5.39 -69.36 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: 1.06 Total: -1.49 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.34 Total: 9.35 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.90 Total: -89.37 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.66 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -74.75 5.39 -69.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191987031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds