Wall clock time and date at job start Sun Mar 29 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46733 * 2 1 4 4 O 1.42902 * 109.47192 * 239.99960 * 2 1 3 5 5 C 1.52995 * 109.47356 * 119.99252 * 2 1 3 6 6 N 1.46895 * 109.47395 * 187.75883 * 5 2 1 7 7 C 1.46896 * 111.00274 * 56.54792 * 6 5 2 8 8 C 1.50699 * 109.47019 * 66.04111 * 7 6 5 9 9 H 1.08002 * 120.00053 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99848 * 179.97438 * 8 7 6 11 11 N 1.31506 * 119.99957 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48509 * 109.47001 * 90.00254 * 12 10 8 14 14 H 1.48498 * 109.46922 * 210.00147 * 12 10 8 15 15 H 1.48500 * 109.47088 * 330.00569 * 12 10 8 16 16 C 1.46906 * 111.00030 * 292.59005 * 6 5 2 17 17 C 1.50704 * 109.47286 * 292.93496 * 16 6 5 18 18 C 1.34509 * 125.79015 * 95.42387 * 17 16 6 19 19 C 1.41376 * 106.84239 * 179.97438 * 18 17 16 20 20 C 1.34516 * 106.83914 * 359.97438 * 19 18 17 21 21 O 1.34297 * 125.78512 * 275.11403 * 17 16 6 22 22 H 1.08996 * 109.47457 * 300.00498 * 1 2 3 23 23 H 1.09001 * 109.46762 * 60.00485 * 1 2 3 24 24 H 1.09002 * 109.46733 * 179.97438 * 1 2 3 25 25 H 0.96703 * 113.99727 * 296.84436 * 4 2 1 26 26 H 1.09008 * 109.46467 * 67.75695 * 5 2 1 27 27 H 1.09000 * 109.47195 * 307.76531 * 5 2 1 28 28 H 1.08994 * 109.47408 * 186.04828 * 7 6 5 29 29 H 1.08999 * 109.46900 * 306.05080 * 7 6 5 30 30 H 0.97006 * 119.99999 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.46900 * 52.93572 * 16 6 5 32 32 H 1.08996 * 109.46707 * 172.92994 * 16 6 5 33 33 H 1.08006 * 126.57963 * 0.03226 * 18 17 16 34 34 H 1.08004 * 126.58181 * 179.97438 * 19 18 17 35 35 H 1.08005 * 125.78837 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7211 1.2493 6 7 3.4970 -0.5612 1.3464 7 6 3.8715 0.8592 1.3555 8 6 3.3550 1.5067 2.6144 9 1 2.8040 0.9215 3.3359 10 6 3.5866 2.8461 2.8458 11 7 4.2579 3.5586 1.9676 12 14 2.9470 3.6486 4.4067 13 1 3.9733 3.5415 5.4747 14 1 2.6546 5.0805 4.1430 15 1 1.7048 2.9619 4.8432 16 6 4.1789 -1.2785 0.2607 17 6 3.9899 -2.7625 0.4427 18 6 3.0402 -3.5124 -0.1447 19 6 3.2310 -4.8397 0.3034 20 6 4.2862 -4.8215 1.1373 21 8 4.7448 -3.5615 1.2142 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7613 -1.6082 -1.2089 26 1 1.7943 -1.7810 1.1827 27 1 1.5678 -0.2936 2.1338 28 1 4.9571 0.9490 1.3197 29 1 3.4370 1.3550 0.4875 30 1 4.4206 4.5010 2.1301 31 1 3.7575 -0.9733 -0.6971 32 1 5.2428 -1.0424 0.2814 33 1 2.2787 -3.1671 -0.8283 34 1 2.6424 -5.7026 0.0287 35 1 4.6975 -5.6760 1.6543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192987929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:32 Heat of formation + Delta-G solvation = -25.313124 kcal Electronic energy + Delta-G solvation = -17745.892318 eV Core-core repulsion = 14939.166217 eV Total energy + Delta-G solvation = -2806.726101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24069 -38.53147 -35.21602 -32.84798 -32.47914 -31.22840 -29.76809 -27.00956 -26.12138 -23.68480 -22.21629 -21.43742 -20.35875 -19.77186 -16.99603 -16.46903 -15.99523 -15.78239 -15.41929 -14.81963 -14.53195 -14.20429 -13.59807 -13.32627 -12.62862 -12.53359 -12.41758 -12.14861 -12.02481 -11.47919 -11.35436 -11.09857 -10.79043 -10.72209 -10.60474 -10.46352 -9.98344 -9.70024 -9.62829 -9.20419 -8.44919 -8.17435 -7.07348 -6.04764 -4.06589 2.06432 2.86691 3.30801 3.36964 3.37581 3.40309 4.41051 4.61508 4.96438 5.14395 5.26516 5.30040 5.31761 5.36824 5.61045 5.66698 5.84396 5.92861 6.02761 6.08899 6.15735 6.33098 6.37611 6.50038 6.55065 6.65470 6.78682 7.22802 7.35892 7.50785 7.76319 7.89046 8.04802 8.16375 8.49123 9.00873 9.57730 11.05601 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.007242 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.530910 B = 3865.402257 C = 4388.715994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.056 3.944 3 H 0.121 0.879 4 O -0.560 6.560 5 C 0.034 3.966 6 N -0.526 5.526 7 C 0.188 3.812 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.093 3.907 17 C 0.036 3.964 18 C -0.232 4.232 19 C -0.214 4.214 20 C -0.057 4.057 21 O -0.169 6.169 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.360 0.640 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.004 0.996 30 H 0.262 0.738 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 -12.635 -4.444 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.003 4.003 3 H 0.138 0.862 4 O -0.368 6.368 5 C -0.095 4.095 6 N -0.250 5.250 7 C 0.064 3.936 8 C -0.547 4.547 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.034 4.034 17 C -0.015 4.015 18 C -0.252 4.252 19 C -0.233 4.233 20 C -0.125 4.125 21 O -0.064 6.064 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.208 0.792 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.749 -11.948 -3.965 13.135 hybrid contribution -1.014 0.115 0.242 1.049 sum -4.764 -11.832 -3.723 13.288 Atomic orbital electron populations 1.22397 0.97132 1.01495 1.02508 1.22955 0.92825 0.99283 0.85271 0.86189 1.86577 1.78328 1.26766 1.45092 1.22738 0.90174 0.98935 0.97671 1.62349 1.05038 1.15865 1.41710 1.19848 0.96741 0.80155 0.96880 1.21133 1.35018 0.93741 1.04792 0.91931 1.24970 0.95403 0.97288 0.96814 1.69954 1.40556 1.07919 1.35177 0.86520 0.79246 0.78379 0.83395 1.20630 1.21318 1.19893 1.21218 1.01161 0.83444 0.97622 1.22853 0.92160 0.93723 0.92796 1.21448 1.03084 0.93368 1.07278 1.21711 1.00868 0.98059 1.02706 1.23907 0.98768 0.85919 1.03927 1.84092 1.49528 1.17698 1.55081 0.91349 0.92512 0.93136 0.79153 0.92164 0.89259 0.95100 0.97802 0.92871 0.87727 0.90322 0.84310 0.84075 0.78802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.55 37.16 0.35 -2.18 16 2 C 0.06 0.97 3.30 -26.73 -0.09 0.89 16 3 H 0.12 2.53 5.81 -51.93 -0.30 2.22 16 4 O -0.56 -9.05 10.07 -35.23 -0.35 -9.41 16 5 C 0.03 0.63 4.75 -3.83 -0.02 0.61 16 6 N -0.53 -11.27 4.68 -237.52 -1.11 -12.38 16 7 C 0.19 4.77 4.43 -4.98 -0.02 4.75 16 8 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 9 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 12 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.09 1.74 5.17 -4.97 -0.03 1.71 16 17 C 0.04 0.61 6.11 -35.62 -0.22 0.40 16 18 C -0.23 -3.34 9.33 -39.71 -0.37 -3.71 16 19 C -0.21 -2.77 10.91 -39.70 -0.43 -3.20 16 20 C -0.06 -0.76 12.09 29.42 0.36 -0.41 16 21 O -0.17 -2.90 10.65 5.72 0.06 -2.84 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.36 4.67 6.16 45.56 0.28 4.95 16 26 H 0.06 1.02 6.21 -51.92 -0.32 0.70 16 27 H 0.09 1.80 6.95 -51.93 -0.36 1.44 16 28 H 0.03 0.85 7.92 -51.93 -0.41 0.44 16 29 H 0.00 0.12 5.75 -51.93 -0.30 -0.18 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.11 1.90 4.84 -51.93 -0.25 1.65 16 32 H 0.08 1.51 7.91 -51.93 -0.41 1.10 16 33 H 0.14 1.70 5.58 -52.48 -0.29 1.40 16 34 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.20 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 282.27 15.07 4.25 4.25 Total: -1.00 -30.26 282.27 -6.29 -36.55 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.99 Total: 6.80 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.86 Total: -13.88 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.38 Total: -37.85 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.29 Total: -12.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.26 -6.29 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192987929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds