Wall clock time and date at job start Sun Mar 29 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46733 * 2 1 4 4 O 1.42902 * 109.47192 * 239.99960 * 2 1 3 5 5 C 1.52995 * 109.47356 * 119.99252 * 2 1 3 6 6 N 1.46895 * 109.47395 * 187.75883 * 5 2 1 7 7 C 1.46896 * 111.00274 * 56.54792 * 6 5 2 8 8 C 1.50699 * 109.47019 * 66.04111 * 7 6 5 9 9 H 1.08002 * 120.00053 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99848 * 179.97438 * 8 7 6 11 11 N 1.31506 * 119.99957 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48509 * 109.47001 * 90.00254 * 12 10 8 14 14 H 1.48498 * 109.46922 * 210.00147 * 12 10 8 15 15 H 1.48500 * 109.47088 * 330.00569 * 12 10 8 16 16 C 1.46906 * 111.00030 * 292.59005 * 6 5 2 17 17 C 1.50704 * 109.47286 * 292.93496 * 16 6 5 18 18 C 1.34509 * 125.79015 * 95.42387 * 17 16 6 19 19 C 1.41376 * 106.84239 * 179.97438 * 18 17 16 20 20 C 1.34516 * 106.83914 * 359.97438 * 19 18 17 21 21 O 1.34297 * 125.78512 * 275.11403 * 17 16 6 22 22 H 1.08996 * 109.47457 * 300.00498 * 1 2 3 23 23 H 1.09001 * 109.46762 * 60.00485 * 1 2 3 24 24 H 1.09002 * 109.46733 * 179.97438 * 1 2 3 25 25 H 0.96703 * 113.99727 * 296.84436 * 4 2 1 26 26 H 1.09008 * 109.46467 * 67.75695 * 5 2 1 27 27 H 1.09000 * 109.47195 * 307.76531 * 5 2 1 28 28 H 1.08994 * 109.47408 * 186.04828 * 7 6 5 29 29 H 1.08999 * 109.46900 * 306.05080 * 7 6 5 30 30 H 0.97006 * 119.99999 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.46900 * 52.93572 * 16 6 5 32 32 H 1.08996 * 109.46707 * 172.92994 * 16 6 5 33 33 H 1.08006 * 126.57963 * 0.03226 * 18 17 16 34 34 H 1.08004 * 126.58181 * 179.97438 * 19 18 17 35 35 H 1.08005 * 125.78837 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7211 1.2493 6 7 3.4970 -0.5612 1.3464 7 6 3.8715 0.8592 1.3555 8 6 3.3550 1.5067 2.6144 9 1 2.8040 0.9215 3.3359 10 6 3.5866 2.8461 2.8458 11 7 4.2579 3.5586 1.9676 12 14 2.9470 3.6486 4.4067 13 1 3.9733 3.5415 5.4747 14 1 2.6546 5.0805 4.1430 15 1 1.7048 2.9619 4.8432 16 6 4.1789 -1.2785 0.2607 17 6 3.9899 -2.7625 0.4427 18 6 3.0402 -3.5124 -0.1447 19 6 3.2310 -4.8397 0.3034 20 6 4.2862 -4.8215 1.1373 21 8 4.7448 -3.5615 1.2142 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7613 -1.6082 -1.2089 26 1 1.7943 -1.7810 1.1827 27 1 1.5678 -0.2936 2.1338 28 1 4.9571 0.9490 1.3197 29 1 3.4370 1.3550 0.4875 30 1 4.4206 4.5010 2.1301 31 1 3.7575 -0.9733 -0.6971 32 1 5.2428 -1.0424 0.2814 33 1 2.2787 -3.1671 -0.8283 34 1 2.6424 -5.7026 0.0287 35 1 4.6975 -5.6760 1.6543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192987929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:32 Heat of formation + Delta-G solvation = -47.504703 kcal Electronic energy + Delta-G solvation = -17746.854617 eV Core-core repulsion = 14939.166217 eV Total energy + Delta-G solvation = -2807.688400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.39766 -40.03005 -36.77675 -34.71558 -33.82386 -32.54144 -31.19709 -28.85166 -27.48792 -25.45485 -23.73440 -22.58722 -21.80595 -21.13072 -18.57383 -17.97425 -17.45058 -17.36217 -16.76917 -16.53991 -16.13354 -15.54327 -15.24187 -14.68310 -14.27647 -13.76440 -13.67102 -13.50898 -13.33219 -13.03532 -12.88477 -12.76346 -12.59160 -12.40039 -12.20313 -12.03397 -11.80865 -11.38145 -11.06863 -10.72928 -10.57941 -9.34198 -8.74189 -8.18794 -6.29347 0.90404 1.41009 1.42474 1.53112 1.79930 2.26049 2.41053 3.13129 3.29628 3.48039 3.93964 3.95493 4.22021 4.25010 4.28702 4.33020 4.44457 4.58866 4.82583 4.89473 4.94875 5.01984 5.07195 5.10969 5.24114 5.27098 5.32780 5.43104 5.66134 5.73450 6.04353 6.27550 6.39967 6.58669 6.75962 6.86726 7.40054 8.91371 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.007242 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.530910 B = 3865.402257 C = 4388.715994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.076 0.924 4 O -0.565 6.565 5 C 0.040 3.960 6 N -0.540 5.540 7 C 0.205 3.795 8 C -0.520 4.520 9 H 0.061 0.939 10 C 0.004 3.996 11 N -0.933 5.933 12 Si 0.966 3.034 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.262 1.262 16 C 0.100 3.900 17 C -0.005 4.005 18 C -0.214 4.214 19 C -0.217 4.217 20 C -0.054 4.054 21 O -0.199 6.199 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.377 0.623 26 H 0.084 0.916 27 H 0.071 0.929 28 H -0.005 1.005 29 H -0.014 1.014 30 H 0.264 0.736 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -14.764 -4.160 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 H 0.094 0.906 4 O -0.375 6.375 5 C -0.088 4.088 6 N -0.263 5.263 7 C 0.080 3.920 8 C -0.559 4.559 9 H 0.079 0.921 10 C -0.194 4.194 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.187 1.187 16 C -0.027 4.027 17 C -0.055 4.055 18 C -0.234 4.234 19 C -0.236 4.236 20 C -0.121 4.121 21 O -0.096 6.096 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.228 0.772 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.013 0.987 29 H 0.004 0.996 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.178 0.822 34 H 0.193 0.807 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.589 -14.108 -3.693 15.618 hybrid contribution -0.406 0.629 0.100 0.755 sum -5.995 -13.479 -3.593 15.184 Atomic orbital electron populations 1.22308 0.94198 1.03449 1.02727 1.22594 0.94926 0.96881 0.84996 0.90611 1.86542 1.78617 1.28109 1.44203 1.22708 0.88213 1.00278 0.97631 1.62209 1.07156 1.13286 1.43639 1.19449 0.94149 0.82780 0.95671 1.21408 1.34914 0.94225 1.05311 0.92084 1.25858 0.95495 0.97896 1.00130 1.70085 1.41763 1.08271 1.37211 0.85434 0.78961 0.77429 0.79108 1.20248 1.20723 1.18653 1.21045 0.99598 0.85198 0.96891 1.22474 0.94473 0.92861 0.95711 1.21779 1.01880 0.93829 1.05901 1.22121 1.00992 0.98299 1.02155 1.24814 0.98539 0.85316 1.03476 1.84053 1.50458 1.19323 1.55745 0.91666 0.91803 0.90269 0.77219 0.89787 0.91011 0.98692 0.99639 0.92710 0.87328 0.92429 0.82183 0.80719 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 9.55 71.98 0.69 -3.83 16 2 C 0.07 2.28 3.30 30.59 0.10 2.38 16 3 H 0.08 3.35 5.81 -2.39 -0.01 3.33 16 4 O -0.57 -17.68 10.07 -148.98 -1.50 -19.18 16 5 C 0.04 1.49 4.75 86.30 0.41 1.90 16 6 N -0.54 -23.90 4.68 -905.38 -4.24 -28.14 16 7 C 0.21 11.02 4.43 85.56 0.38 11.40 16 8 C -0.52 -29.45 8.56 25.60 0.22 -29.23 16 9 H 0.06 3.40 7.10 -2.91 -0.02 3.38 16 10 C 0.00 0.25 5.46 84.66 0.46 0.71 16 11 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 12 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 16 C 0.10 3.85 5.17 85.56 0.44 4.30 16 17 C 0.00 -0.16 6.11 24.83 0.15 0.00 16 18 C -0.21 -5.57 9.33 22.19 0.21 -5.36 16 19 C -0.22 -4.76 10.91 22.19 0.24 -4.52 16 20 C -0.05 -1.29 12.09 66.97 0.81 -0.48 16 21 O -0.20 -6.66 10.65 -2.46 -0.03 -6.69 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.38 8.76 6.16 -74.06 -0.46 8.30 16 26 H 0.08 2.70 6.21 -2.38 -0.01 2.69 16 27 H 0.07 2.91 6.95 -2.39 -0.02 2.89 16 28 H -0.01 -0.30 7.92 -2.39 -0.02 -0.32 16 29 H -0.01 -0.79 5.75 -2.39 -0.01 -0.80 16 30 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 31 H 0.11 4.04 4.84 -2.39 -0.01 4.03 16 32 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16 33 H 0.16 3.31 5.58 -2.91 -0.02 3.29 16 34 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.23 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -67.78 282.27 1.30 -66.49 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.64 Total: 19.91 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 4.11 Total: -22.73 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.96 Total: -84.12 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.53 Total: -25.87 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.78 1.30 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192987929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.982 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds