Wall clock time and date at job start Sun Mar 29 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47311 * 55.10346 * 3 2 1 5 5 C 1.50698 * 109.47327 * 175.09942 * 3 2 1 6 6 H 1.08003 * 119.99928 * 119.99922 * 5 3 2 7 7 C 1.37883 * 120.00073 * 300.00327 * 5 3 2 8 8 N 1.31509 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00176 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46838 * 59.99996 * 9 7 5 11 11 H 1.48493 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47091 * 300.00417 * 9 7 5 13 13 N 1.46901 * 109.47625 * 295.10110 * 3 2 1 14 14 C 1.46894 * 111.00181 * 154.21243 * 13 3 2 15 15 C 1.53000 * 109.47239 * 185.20299 * 14 13 3 16 16 C 1.50698 * 109.47278 * 180.02562 * 15 14 13 17 17 N 1.29943 * 126.28835 * 269.97438 * 16 15 14 18 18 O 1.21307 * 110.25347 * 179.73032 * 17 16 15 19 19 C 1.33644 * 109.80674 * 0.46697 * 18 17 16 20 20 C 1.50702 * 126.54819 * 179.80574 * 19 18 17 21 21 N 1.31131 * 106.89971 * 359.54260 * 19 18 17 22 22 H 1.09000 * 109.46919 * 300.45316 * 1 2 3 23 23 H 1.09004 * 109.47308 * 60.44470 * 1 2 3 24 24 H 1.08991 * 109.47270 * 180.44779 * 1 2 3 25 25 H 1.09004 * 109.46962 * 240.00434 * 2 1 3 26 26 H 1.08994 * 109.47230 * 120.00252 * 2 1 3 27 27 H 0.97000 * 120.00339 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00375 * 278.17365 * 13 3 2 29 29 H 1.09006 * 109.46834 * 65.20579 * 14 13 3 30 30 H 1.08997 * 109.47523 * 305.20424 * 14 13 3 31 31 H 1.09006 * 109.46979 * 60.00369 * 15 14 13 32 32 H 1.09005 * 109.47321 * 300.00441 * 15 14 13 33 33 H 1.08997 * 109.46869 * 269.68906 * 20 19 18 34 34 H 1.08999 * 109.47095 * 29.68738 * 20 19 18 35 35 H 1.09003 * 109.47216 * 149.68908 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 0.8429 5 6 3.5421 1.4442 0.1214 6 1 4.1461 1.8892 -0.6555 7 6 4.1454 0.8776 1.2242 8 7 3.4099 0.3352 2.1699 9 14 6.0073 0.8791 1.3743 10 1 6.5027 2.2791 1.3740 11 1 6.4023 0.2140 2.6419 12 1 6.5971 0.1452 0.2260 13 7 1.6494 2.1001 -1.2542 14 6 1.5528 3.5552 -1.0777 15 6 1.0203 4.1906 -2.3636 16 6 0.9217 5.6835 -2.1828 17 7 -0.1090 6.3379 -1.7382 18 8 0.1302 7.5267 -1.7060 19 6 1.3707 7.7511 -2.1500 20 6 2.0513 9.0901 -2.2730 21 7 1.8843 6.5832 -2.4527 22 1 -0.3633 0.5209 0.8859 23 1 -0.3634 0.5069 -0.8940 24 1 -0.3633 -1.0275 0.0080 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8342 -0.0638 2.9456 28 1 2.2893 1.8678 -1.9989 29 1 2.5397 3.9603 -0.8539 30 1 0.8737 3.7771 -0.2546 31 1 0.0334 3.7855 -2.5874 32 1 1.6994 3.9687 -3.1869 33 1 1.8599 9.5053 -3.2624 34 1 1.6611 9.7672 -1.5131 35 1 3.1251 8.9661 -2.1324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231888007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:15 Heat of formation + Delta-G solvation = 51.496285 kcal Electronic energy + Delta-G solvation = -16798.100144 eV Core-core repulsion = 14026.997500 eV Total energy + Delta-G solvation = -2771.102644 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.50333 -36.79201 -35.77750 -34.06291 -32.66693 -31.36443 -29.39082 -28.70072 -26.14814 -23.87062 -22.96298 -22.04066 -20.80125 -19.46170 -18.08121 -17.32196 -16.68475 -15.22515 -14.89497 -14.43614 -14.10455 -13.66874 -13.61202 -13.33197 -13.02290 -12.81827 -12.16713 -12.04390 -11.89903 -11.34916 -11.25689 -11.12434 -10.94245 -10.93655 -10.73639 -10.56446 -10.11237 -9.83946 -9.58610 -9.43433 -9.06913 -8.37980 -7.31084 -5.99935 -4.12927 1.20601 2.32600 2.85153 3.28377 3.33375 3.35976 3.70874 4.16128 4.39591 4.93304 5.02624 5.05042 5.23773 5.34883 5.48540 5.54272 5.72874 5.86541 6.00526 6.16359 6.36860 6.46731 6.52476 6.59692 6.72591 7.13206 7.18802 7.42690 7.58240 7.77389 8.07030 8.12806 8.27555 8.30417 8.63035 8.98695 9.54556 11.00489 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.005602 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.983878 B = 4997.238029 C = 5861.958760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.687 5.687 14 C 0.076 3.924 15 C -0.029 4.029 16 C 0.186 3.814 17 N -0.385 5.385 18 O 0.071 5.929 19 C 0.167 3.833 20 C -0.059 4.059 21 N -0.480 5.480 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 13.483 -8.043 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.317 5.317 14 C -0.055 4.055 15 C -0.069 4.069 16 C -0.087 4.087 17 N -0.093 5.093 18 O 0.013 5.987 19 C -0.054 4.054 20 C -0.117 4.117 21 N -0.214 5.214 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.681 12.608 -7.651 15.473 hybrid contribution 2.093 0.396 0.280 2.149 sum -2.587 13.004 -7.371 15.170 Atomic orbital electron populations 1.21708 0.98989 0.98385 1.00434 1.21492 0.92109 0.99062 1.01737 1.19149 0.92896 0.91270 0.85907 0.95065 1.21826 0.92669 1.38377 1.05734 0.92847 1.24929 0.97985 0.94937 0.95641 1.69866 1.34952 1.38056 1.09441 0.86704 0.85999 0.78189 0.77393 1.20421 1.21193 1.20211 1.60862 1.55178 1.05189 1.10428 1.21631 0.99210 0.90536 0.94144 1.20088 1.04185 0.81570 1.01050 1.25997 0.84875 1.00352 0.97448 1.74656 1.23909 0.89277 1.21480 1.85276 1.31383 1.20538 1.61501 1.28828 0.83742 0.98472 0.94356 1.20344 1.00654 0.85956 1.04788 1.71925 1.29229 0.98382 1.21896 0.94522 0.93299 0.95601 0.95009 0.89116 0.92798 0.85472 0.94855 0.91930 0.88677 0.89102 0.88296 0.88599 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.79 37.16 0.36 -2.53 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.40 1.98 -68.87 -0.14 5.26 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.55 -14.88 8.47 -34.44 -0.29 -15.17 16 6 H 0.05 1.44 7.73 -52.48 -0.41 1.04 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -25.21 11.29 55.43 0.63 -24.59 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.69 -14.47 5.68 -107.96 -0.61 -15.09 16 14 C 0.08 1.49 5.49 -3.83 -0.02 1.47 16 15 C -0.03 -0.48 6.14 -27.88 -0.17 -0.65 16 16 C 0.19 3.07 7.47 -156.37 -1.17 1.90 16 17 N -0.38 -6.31 12.16 30.90 0.38 -5.93 16 18 O 0.07 0.98 11.31 18.10 0.20 1.18 16 19 C 0.17 2.00 8.51 -13.05 -0.11 1.89 16 20 C -0.06 -0.35 10.51 36.01 0.38 0.02 16 21 N -0.48 -7.40 11.55 -9.86 -0.11 -7.51 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.98 7.76 -51.93 -0.40 0.58 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.33 6.73 8.46 -39.29 -0.33 6.40 16 29 H 0.03 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.06 1.30 7.92 -51.93 -0.41 0.89 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -30.65 299.04 -6.63 -37.29 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.20 Total: 2.57 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.40 Total: -8.71 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.27 Total: -53.12 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.20 Total: 1.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.65 -6.63 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231888007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.781 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds