Wall clock time and date at job start Sun Mar 29 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47311 * 55.10346 * 3 2 1 5 5 C 1.50698 * 109.47327 * 175.09942 * 3 2 1 6 6 H 1.08003 * 119.99928 * 119.99922 * 5 3 2 7 7 C 1.37883 * 120.00073 * 300.00327 * 5 3 2 8 8 N 1.31509 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00176 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46838 * 59.99996 * 9 7 5 11 11 H 1.48493 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47091 * 300.00417 * 9 7 5 13 13 N 1.46901 * 109.47625 * 295.10110 * 3 2 1 14 14 C 1.46894 * 111.00181 * 154.21243 * 13 3 2 15 15 C 1.53000 * 109.47239 * 185.20299 * 14 13 3 16 16 C 1.50698 * 109.47278 * 180.02562 * 15 14 13 17 17 N 1.29943 * 126.28835 * 269.97438 * 16 15 14 18 18 O 1.21307 * 110.25347 * 179.73032 * 17 16 15 19 19 C 1.33644 * 109.80674 * 0.46697 * 18 17 16 20 20 C 1.50702 * 126.54819 * 179.80574 * 19 18 17 21 21 N 1.31131 * 106.89971 * 359.54260 * 19 18 17 22 22 H 1.09000 * 109.46919 * 300.45316 * 1 2 3 23 23 H 1.09004 * 109.47308 * 60.44470 * 1 2 3 24 24 H 1.08991 * 109.47270 * 180.44779 * 1 2 3 25 25 H 1.09004 * 109.46962 * 240.00434 * 2 1 3 26 26 H 1.08994 * 109.47230 * 120.00252 * 2 1 3 27 27 H 0.97000 * 120.00339 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00375 * 278.17365 * 13 3 2 29 29 H 1.09006 * 109.46834 * 65.20579 * 14 13 3 30 30 H 1.08997 * 109.47523 * 305.20424 * 14 13 3 31 31 H 1.09006 * 109.46979 * 60.00369 * 15 14 13 32 32 H 1.09005 * 109.47321 * 300.00441 * 15 14 13 33 33 H 1.08997 * 109.46869 * 269.68906 * 20 19 18 34 34 H 1.08999 * 109.47095 * 29.68738 * 20 19 18 35 35 H 1.09003 * 109.47216 * 149.68908 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 0.8429 5 6 3.5421 1.4442 0.1214 6 1 4.1461 1.8892 -0.6555 7 6 4.1454 0.8776 1.2242 8 7 3.4099 0.3352 2.1699 9 14 6.0073 0.8791 1.3743 10 1 6.5027 2.2791 1.3740 11 1 6.4023 0.2140 2.6419 12 1 6.5971 0.1452 0.2260 13 7 1.6494 2.1001 -1.2542 14 6 1.5528 3.5552 -1.0777 15 6 1.0203 4.1906 -2.3636 16 6 0.9217 5.6835 -2.1828 17 7 -0.1090 6.3379 -1.7382 18 8 0.1302 7.5267 -1.7060 19 6 1.3707 7.7511 -2.1500 20 6 2.0513 9.0901 -2.2730 21 7 1.8843 6.5832 -2.4527 22 1 -0.3633 0.5209 0.8859 23 1 -0.3634 0.5069 -0.8940 24 1 -0.3633 -1.0275 0.0080 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8342 -0.0638 2.9456 28 1 2.2893 1.8678 -1.9989 29 1 2.5397 3.9603 -0.8539 30 1 0.8737 3.7771 -0.2546 31 1 0.0334 3.7855 -2.5874 32 1 1.6994 3.9687 -3.1869 33 1 1.8599 9.5053 -3.2624 34 1 1.6611 9.7672 -1.5131 35 1 3.1251 8.9661 -2.1324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231888007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:14 Heat of formation + Delta-G solvation = 29.414135 kcal Electronic energy + Delta-G solvation = -16799.057698 eV Core-core repulsion = 14026.997500 eV Total energy + Delta-G solvation = -2772.060198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.63415 -38.45105 -37.13115 -35.35748 -34.27197 -33.18985 -30.80531 -29.64354 -28.06718 -25.36306 -24.49366 -23.54540 -22.08966 -21.35938 -19.22014 -18.80092 -18.40825 -16.87306 -16.47954 -15.84917 -15.70077 -15.00043 -14.92037 -14.66908 -14.15857 -13.99899 -13.60496 -13.50110 -13.19246 -13.07846 -12.98463 -12.86935 -12.61603 -12.41041 -12.26212 -12.10097 -11.93504 -11.53547 -11.42893 -11.07601 -10.80759 -10.48742 -9.16692 -8.08648 -6.30916 0.17864 1.16328 1.37980 1.38457 1.46397 1.96521 2.38273 2.64640 3.04593 3.11895 3.70582 3.97565 4.09230 4.34271 4.44038 4.57912 4.61734 4.66440 4.68609 4.75567 4.90321 4.93374 5.01713 5.05363 5.14617 5.16459 5.40799 5.48524 5.60020 5.74381 6.07022 6.15113 6.30190 6.73553 6.96337 7.19150 7.40434 8.88676 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.005602 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.983878 B = 4997.238029 C = 5861.958760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.563 4.563 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.674 5.674 14 C 0.087 3.913 15 C -0.016 4.016 16 C 0.169 3.831 17 N -0.407 5.407 18 O 0.073 5.927 19 C 0.184 3.816 20 C -0.059 4.059 21 N -0.513 5.513 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.336 0.664 29 H 0.011 0.989 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 14.734 -9.164 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.602 4.602 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.044 4.044 15 C -0.055 4.055 16 C -0.104 4.104 17 N -0.116 5.116 18 O 0.015 5.985 19 C -0.036 4.036 20 C -0.117 4.117 21 N -0.248 5.248 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.214 13.868 -8.793 16.952 hybrid contribution 1.946 0.129 0.632 2.050 sum -2.268 13.997 -8.161 16.360 Atomic orbital electron populations 1.21578 0.96449 0.99870 1.00486 1.21347 0.94362 0.97944 1.00327 1.18946 0.91815 0.91755 0.86272 0.98764 1.22130 0.93893 1.38340 1.05882 0.93073 1.25682 1.02319 0.94644 0.95381 1.69999 1.36600 1.38550 1.09806 0.85715 0.80787 0.78145 0.77617 1.20266 1.20718 1.19377 1.60774 1.54782 1.05973 1.08850 1.21486 0.97692 0.89574 0.95677 1.19874 1.04680 0.81754 0.99180 1.26002 0.85513 1.00561 0.98351 1.74627 1.24562 0.90316 1.22128 1.85235 1.32298 1.19452 1.61543 1.29975 0.82678 0.99616 0.91321 1.20777 1.00447 0.83141 1.07292 1.71919 1.29639 0.99466 1.23767 0.95432 0.92209 0.93376 0.94794 0.92004 0.92792 0.84719 0.97106 0.93729 0.87820 0.87774 0.85487 0.85883 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.79 71.98 0.71 -4.51 16 2 C -0.10 -4.93 5.45 30.59 0.17 -4.76 16 3 C 0.22 11.30 1.98 44.17 0.09 11.38 16 4 H -0.01 -0.33 7.70 -2.38 -0.02 -0.34 16 5 C -0.56 -31.06 8.47 25.60 0.22 -30.84 16 6 H 0.05 2.78 7.73 -2.91 -0.02 2.75 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.78 11.29 21.45 0.24 -52.53 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.67 -28.54 5.68 -495.46 -2.81 -31.36 16 14 C 0.09 3.47 5.49 86.30 0.47 3.94 16 15 C -0.02 -0.50 6.14 29.85 0.18 -0.32 16 16 C 0.17 5.51 7.47 138.46 1.03 6.54 16 17 N -0.41 -13.19 12.16 -60.29 -0.73 -13.92 16 18 O 0.07 1.93 11.31 74.82 0.85 2.78 16 19 C 0.18 4.08 8.51 88.38 0.75 4.83 16 20 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 21 N -0.51 -15.39 11.55 -303.17 -3.50 -18.89 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 2.32 7.76 -2.38 -0.02 2.30 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.03 1.59 8.14 -2.38 -0.02 1.58 16 26 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.34 13.61 8.46 -89.70 -0.76 12.85 16 29 H 0.01 0.47 8.11 -2.38 -0.02 0.45 16 30 H 0.04 1.91 7.92 -2.39 -0.02 1.89 16 31 H 0.10 3.11 8.14 -2.38 -0.02 3.10 16 32 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 33 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -67.04 299.04 1.21 -65.83 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.32 Total: 14.19 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.82 Total: -11.93 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -6.81 Total: -116.70 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.85 Total: 2.78 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -67.04 1.21 -65.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231888007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.242 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds