Wall clock time and date at job start Sun Mar 29 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.08999 * 109.47563 * 177.97014 * 3 2 1 5 5 C 1.50707 * 109.47209 * 57.96479 * 3 2 1 6 6 H 1.08002 * 119.99733 * 239.99947 * 5 3 2 7 7 C 1.37869 * 119.99894 * 60.00096 * 5 3 2 8 8 N 1.31516 * 120.00093 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46946 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.47187 * 209.99831 * 9 7 5 12 12 H 1.48494 * 109.46804 * 330.00074 * 9 7 5 13 13 N 1.46902 * 109.47149 * 297.96698 * 3 2 1 14 14 C 1.46903 * 110.99767 * 273.74934 * 13 3 2 15 15 C 1.52999 * 109.46996 * 174.95529 * 14 13 3 16 16 C 1.50703 * 109.47438 * 179.97438 * 15 14 13 17 17 N 1.29942 * 126.28880 * 269.98060 * 16 15 14 18 18 O 1.21297 * 110.25174 * 179.72411 * 17 16 15 19 19 C 1.33643 * 109.81037 * 0.46252 * 18 17 16 20 20 C 1.50703 * 126.55138 * 179.80717 * 19 18 17 21 21 N 1.31127 * 106.89446 * 359.54321 * 19 18 17 22 22 H 1.09004 * 109.46524 * 174.45441 * 1 2 3 23 23 H 1.08995 * 109.47604 * 294.44724 * 1 2 3 24 24 H 1.09000 * 109.47370 * 54.45448 * 1 2 3 25 25 H 1.08996 * 109.47186 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.47496 * 119.99265 * 2 1 3 27 27 H 0.96996 * 120.00118 * 179.97438 * 8 7 5 28 28 H 1.00905 * 111.00149 * 149.79402 * 13 3 2 29 29 H 1.08995 * 109.47191 * 54.95566 * 14 13 3 30 30 H 1.08998 * 109.46931 * 294.95206 * 14 13 3 31 31 H 1.09001 * 109.47508 * 59.99784 * 15 14 13 32 32 H 1.09002 * 109.47421 * 299.99865 * 15 14 13 33 33 H 1.08997 * 109.46644 * 269.68719 * 20 19 18 34 34 H 1.09003 * 109.46787 * 29.68509 * 20 19 18 35 35 H 1.08996 * 109.46887 * 149.68601 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4429 0.0364 5 6 1.4967 2.1674 1.2045 6 1 0.8796 3.0441 1.0742 7 6 1.7877 1.7113 2.4726 8 7 2.5388 0.6434 2.6312 9 14 1.1138 2.6093 3.9657 10 1 -0.2070 2.0382 4.3323 11 1 2.0543 2.4520 5.1040 12 1 0.9584 4.0514 3.6474 13 7 1.5907 2.1207 -1.2233 14 6 2.5280 1.8858 -2.3298 15 6 1.9655 2.4995 -3.6135 16 6 2.9272 2.2591 -4.7486 17 7 3.9021 3.0391 -5.1089 18 8 4.4946 2.5618 -6.0535 19 6 3.9307 1.4015 -6.4024 20 6 4.3621 0.4964 -7.5276 21 7 2.9340 1.1981 -5.5750 22 1 -0.3632 -1.0229 -0.0993 23 1 -0.3634 0.4253 0.9355 24 1 -0.3634 0.5974 -0.8361 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.7437 0.3228 3.5234 28 1 1.4613 3.1084 -1.0625 29 1 2.6642 0.8134 -2.4691 30 1 3.4878 2.3469 -2.0969 31 1 1.8292 3.5719 -3.4742 32 1 1.0056 2.0385 -3.8464 33 1 3.8332 0.7733 -8.4395 34 1 5.4358 0.5989 -7.6849 35 1 4.1292 -0.5372 -7.2720 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231888010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:17 Heat of formation + Delta-G solvation = 54.944682 kcal Electronic energy + Delta-G solvation = -16798.401660 eV Core-core repulsion = 14027.448549 eV Total energy + Delta-G solvation = -2770.953110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.55971 -36.88065 -35.84116 -34.12365 -32.76742 -31.05656 -29.34002 -28.72812 -26.04671 -23.87611 -23.16058 -22.49825 -20.90947 -19.01949 -18.12612 -17.37610 -16.38399 -15.30617 -14.83544 -14.66935 -14.13123 -13.70972 -13.62015 -13.37724 -12.98814 -12.71309 -12.34563 -12.15193 -11.84697 -11.71133 -11.19632 -11.06293 -10.93794 -10.82058 -10.67350 -10.36742 -10.05928 -9.86911 -9.62889 -9.33925 -8.77224 -8.46908 -7.29016 -6.01345 -4.06955 1.15437 2.27212 2.80352 3.30232 3.36878 3.39542 3.65545 4.10616 4.41195 4.88520 4.98962 5.00877 5.27145 5.32012 5.43466 5.47510 5.60828 5.83537 5.93832 6.05318 6.35511 6.40742 6.55806 6.73853 6.87601 7.26200 7.30638 7.51058 7.74873 7.79911 7.84668 8.22140 8.25353 8.36541 8.64703 9.01622 9.57752 11.04813 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045411 B = 0.004497 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.446659 B = 6224.918127 C = 6425.533940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.070 3.930 15 C -0.028 4.028 16 C 0.186 3.814 17 N -0.387 5.387 18 O 0.071 5.929 19 C 0.167 3.833 20 C -0.059 4.059 21 N -0.478 5.478 22 H 0.013 0.987 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.010 0.990 26 H 0.085 0.915 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 0.110 -17.259 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.061 4.061 15 C -0.068 4.068 16 C -0.087 4.087 17 N -0.095 5.095 18 O 0.013 5.987 19 C -0.054 4.054 20 C -0.118 4.118 21 N -0.213 5.213 22 H 0.032 0.968 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.127 0.017 -16.713 16.848 hybrid contribution 0.551 0.883 1.014 1.453 sum 2.677 0.901 -15.698 15.950 Atomic orbital electron populations 1.21435 0.97421 0.97179 1.01567 1.21427 0.95188 0.98130 0.99328 1.19130 0.93336 0.91703 0.84954 0.98219 1.21179 1.31678 1.12011 0.90314 0.92217 1.24885 0.95055 0.95031 0.98873 1.69892 1.37351 1.23128 1.22391 0.86563 0.78785 0.80075 0.82388 1.20604 1.21336 1.19961 1.60650 1.47108 1.16276 1.07399 1.21764 0.93886 1.00328 0.90153 1.20064 0.95454 1.02719 0.88547 1.26005 0.96481 0.87167 0.99090 1.74657 1.10170 1.21992 1.02692 1.85273 1.46772 1.30912 1.35724 1.28851 0.89967 0.88184 0.98354 1.20350 1.03275 0.96649 0.91476 1.71924 1.19297 1.24027 1.06034 0.96831 0.92955 0.93400 0.97151 0.89647 0.92956 0.85135 0.91282 0.96167 0.89460 0.87984 0.88255 0.88596 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.46 37.16 0.35 -2.36 16 2 C -0.10 -2.53 5.58 -26.73 -0.15 -2.68 16 3 C 0.22 5.45 2.30 -68.86 -0.16 5.29 16 4 H 0.00 0.00 7.84 -51.93 -0.41 -0.40 16 5 C -0.51 -13.83 7.34 -34.44 -0.25 -14.08 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.34 11.34 55.43 0.63 -24.71 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -14.43 5.51 -107.95 -0.59 -15.03 16 14 C 0.07 1.32 5.44 -3.82 -0.02 1.30 16 15 C -0.03 -0.45 6.14 -27.88 -0.17 -0.62 16 16 C 0.19 2.96 7.47 -156.38 -1.17 1.79 16 17 N -0.39 -6.15 12.16 30.89 0.38 -5.77 16 18 O 0.07 0.94 11.31 18.10 0.20 1.15 16 19 C 0.17 1.91 8.51 -13.06 -0.11 1.80 16 20 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 21 N -0.48 -7.09 11.55 -9.87 -0.11 -7.21 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.05 1.28 7.37 -51.93 -0.38 0.89 16 24 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 25 H 0.01 0.23 7.43 -51.93 -0.39 -0.15 16 26 H 0.09 2.33 6.12 -51.93 -0.32 2.02 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.33 6.78 8.25 -39.29 -0.32 6.45 16 29 H 0.07 1.38 7.40 -51.93 -0.38 1.00 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -30.75 295.58 -6.55 -37.29 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.08 Total: 1.47 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.40 Total: -7.86 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.30 Total: -52.72 kcal Atomic # 8 Polarization: 0.94 SS G_CDS: 0.20 Total: 1.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.75 -6.55 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231888010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.238 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds