Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.08999 * 109.47563 * 177.97014 * 3 2 1 5 5 C 1.50707 * 109.47209 * 57.96479 * 3 2 1 6 6 H 1.08002 * 119.99733 * 239.99947 * 5 3 2 7 7 C 1.37869 * 119.99894 * 60.00096 * 5 3 2 8 8 N 1.31516 * 120.00093 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46946 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.47187 * 209.99831 * 9 7 5 12 12 H 1.48494 * 109.46804 * 330.00074 * 9 7 5 13 13 N 1.46902 * 109.47149 * 297.96698 * 3 2 1 14 14 C 1.46903 * 110.99767 * 273.74934 * 13 3 2 15 15 C 1.52999 * 109.46996 * 174.95529 * 14 13 3 16 16 C 1.50703 * 109.47438 * 179.97438 * 15 14 13 17 17 N 1.29942 * 126.28880 * 269.98060 * 16 15 14 18 18 O 1.21297 * 110.25174 * 179.72411 * 17 16 15 19 19 C 1.33643 * 109.81037 * 0.46252 * 18 17 16 20 20 C 1.50703 * 126.55138 * 179.80717 * 19 18 17 21 21 N 1.31127 * 106.89446 * 359.54321 * 19 18 17 22 22 H 1.09004 * 109.46524 * 174.45441 * 1 2 3 23 23 H 1.08995 * 109.47604 * 294.44724 * 1 2 3 24 24 H 1.09000 * 109.47370 * 54.45448 * 1 2 3 25 25 H 1.08996 * 109.47186 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.47496 * 119.99265 * 2 1 3 27 27 H 0.96996 * 120.00118 * 179.97438 * 8 7 5 28 28 H 1.00905 * 111.00149 * 149.79402 * 13 3 2 29 29 H 1.08995 * 109.47191 * 54.95566 * 14 13 3 30 30 H 1.08998 * 109.46931 * 294.95206 * 14 13 3 31 31 H 1.09001 * 109.47508 * 59.99784 * 15 14 13 32 32 H 1.09002 * 109.47421 * 299.99865 * 15 14 13 33 33 H 1.08997 * 109.46644 * 269.68719 * 20 19 18 34 34 H 1.09003 * 109.46787 * 29.68509 * 20 19 18 35 35 H 1.08996 * 109.46887 * 149.68601 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4429 0.0364 5 6 1.4967 2.1674 1.2045 6 1 0.8796 3.0441 1.0742 7 6 1.7877 1.7113 2.4726 8 7 2.5388 0.6434 2.6312 9 14 1.1138 2.6093 3.9657 10 1 -0.2070 2.0382 4.3323 11 1 2.0543 2.4520 5.1040 12 1 0.9584 4.0514 3.6474 13 7 1.5907 2.1207 -1.2233 14 6 2.5280 1.8858 -2.3298 15 6 1.9655 2.4995 -3.6135 16 6 2.9272 2.2591 -4.7486 17 7 3.9021 3.0391 -5.1089 18 8 4.4946 2.5618 -6.0535 19 6 3.9307 1.4015 -6.4024 20 6 4.3621 0.4964 -7.5276 21 7 2.9340 1.1981 -5.5750 22 1 -0.3632 -1.0229 -0.0993 23 1 -0.3634 0.4253 0.9355 24 1 -0.3634 0.5974 -0.8361 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.7437 0.3228 3.5234 28 1 1.4613 3.1084 -1.0625 29 1 2.6642 0.8134 -2.4691 30 1 3.4878 2.3469 -2.0969 31 1 1.8292 3.5719 -3.4742 32 1 1.0056 2.0385 -3.8464 33 1 3.8332 0.7733 -8.4395 34 1 5.4358 0.5989 -7.6849 35 1 4.1292 -0.5372 -7.2720 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231888010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = 32.825864 kcal Electronic energy + Delta-G solvation = -16799.360804 eV Core-core repulsion = 14027.448549 eV Total energy + Delta-G solvation = -2771.912254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.64572 -38.53445 -37.15415 -35.40961 -34.30350 -32.89966 -30.76499 -29.64564 -27.96649 -25.37717 -24.86896 -23.83683 -22.07495 -20.97815 -19.22880 -18.53036 -18.31145 -17.03137 -16.34130 -16.05063 -15.57696 -15.37582 -14.63581 -14.59422 -14.15767 -14.06278 -13.88825 -13.63359 -13.32229 -12.98334 -12.84082 -12.64157 -12.49304 -12.41246 -12.24857 -12.08991 -11.84772 -11.63431 -11.32873 -10.86856 -10.79025 -10.55255 -9.12332 -8.10766 -6.23493 0.17099 1.15697 1.42662 1.43717 1.53160 1.96174 2.41737 2.63535 3.04038 3.18425 3.65035 3.98318 4.11364 4.19395 4.41178 4.57983 4.62234 4.65739 4.67896 4.79505 4.89525 4.91347 4.95850 5.07759 5.16495 5.28828 5.37606 5.54597 5.70437 5.79001 5.87250 6.24592 6.41529 6.73110 6.99362 7.18362 7.45369 8.94887 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045411 B = 0.004497 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.446659 B = 6224.918127 C = 6425.533940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.040 1.040 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.674 5.674 14 C 0.080 3.920 15 C -0.016 4.016 16 C 0.169 3.831 17 N -0.409 5.409 18 O 0.073 5.927 19 C 0.185 3.815 20 C -0.059 4.059 21 N -0.511 5.511 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.337 0.663 29 H 0.055 0.945 30 H 0.006 0.994 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 0.294 -18.668 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.112 3.888 4 H -0.022 1.022 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.305 5.305 14 C -0.051 4.051 15 C -0.055 4.055 16 C -0.104 4.104 17 N -0.119 5.119 18 O 0.014 5.986 19 C -0.035 4.035 20 C -0.117 4.117 21 N -0.246 5.246 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.154 0.846 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.609 0.204 -18.146 18.219 hybrid contribution 0.796 0.774 1.326 1.730 sum 2.405 0.978 -16.820 17.019 Atomic orbital electron populations 1.21298 0.95630 0.98603 1.00844 1.21313 0.96662 0.97506 0.98247 1.18937 0.90905 0.92510 0.86406 1.02206 1.21448 1.31584 1.12159 0.91135 0.91993 1.25658 0.95280 0.95711 1.01662 1.70033 1.38396 1.24422 1.22918 0.85564 0.78096 0.79197 0.78841 1.20074 1.21268 1.19140 1.60561 1.47226 1.16371 1.06308 1.21643 0.93013 0.99590 0.90866 1.19852 0.95530 1.03133 0.86964 1.25978 0.96822 0.87934 0.99640 1.74630 1.10525 1.22962 1.03758 1.85233 1.46507 1.31687 1.35142 1.29992 0.88126 0.87377 0.98001 1.20783 1.05262 0.95551 0.90068 1.71919 1.21233 1.24211 1.07195 0.94654 0.94835 0.92466 0.96455 0.92452 0.93005 0.84553 0.92673 0.97586 0.88328 0.87321 0.85569 0.85899 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.46 71.98 0.68 -4.09 16 2 C -0.10 -4.93 5.58 30.59 0.17 -4.76 16 3 C 0.22 11.35 2.30 44.17 0.10 11.45 16 4 H -0.04 -2.31 7.84 -2.39 -0.02 -2.33 16 5 C -0.52 -28.45 7.34 25.60 0.19 -28.26 16 6 H 0.06 3.27 7.60 -2.91 -0.02 3.24 16 7 C 0.02 0.88 5.30 84.65 0.45 1.33 16 8 N -0.92 -53.26 11.34 21.44 0.24 -53.02 16 9 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.67 -28.51 5.51 -495.44 -2.73 -31.24 16 14 C 0.08 3.05 5.44 86.30 0.47 3.52 16 15 C -0.02 -0.49 6.14 29.85 0.18 -0.30 16 16 C 0.17 5.32 7.47 138.47 1.03 6.35 16 17 N -0.41 -12.81 12.16 -60.35 -0.73 -13.54 16 18 O 0.07 1.84 11.31 74.84 0.85 2.69 16 19 C 0.18 3.88 8.51 88.38 0.75 4.63 16 20 C -0.06 -0.44 10.51 71.24 0.75 0.31 16 21 N -0.51 -14.64 11.55 -303.22 -3.50 -18.14 16 22 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.03 1.60 7.37 -2.39 -0.02 1.58 16 24 H 0.06 2.43 7.50 -2.39 -0.02 2.41 16 25 H 0.02 0.80 7.43 -2.39 -0.02 0.79 16 26 H 0.06 3.20 6.12 -2.39 -0.01 3.19 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.34 13.68 8.25 -89.69 -0.74 12.94 16 29 H 0.05 2.24 7.40 -2.39 -0.02 2.22 16 30 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -66.90 295.58 1.28 -65.63 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.35 Total: 11.93 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.78 Total: -9.83 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -6.72 Total: -115.95 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.85 Total: 2.69 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.90 1.28 -65.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231888010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.455 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds