Wall clock time and date at job start Sun Mar 29 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47375 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47198 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46868 * 329.99673 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 N 1.31126 * 126.55438 * 89.99587 * 16 15 14 18 18 C 1.34490 * 105.61557 * 179.97438 * 17 16 15 19 19 C 1.50698 * 126.29078 * 180.02562 * 18 17 16 20 20 N 1.29949 * 107.42639 * 0.02562 * 18 17 16 21 21 O 1.21307 * 110.24550 * 359.69851 * 20 18 17 22 22 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 23 23 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 24 24 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 25 25 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 26 26 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 27 27 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 28 28 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 31 31 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 32 32 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 33 33 H 1.09003 * 109.47059 * 90.00047 * 19 18 17 34 34 H 1.08999 * 109.47583 * 210.00582 * 19 18 17 35 35 H 1.09004 * 109.46931 * 330.00164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 2.2395 3.5998 -4.4135 11 1 1.0977 1.5787 -5.1151 12 1 -0.0490 3.1970 -3.7198 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 7 3.9505 3.1873 5.0071 18 6 4.4381 2.6270 6.1284 19 6 5.6752 3.0557 6.8745 20 7 3.6464 1.6481 6.4503 21 8 2.7373 1.5634 5.6516 22 1 -0.3633 -1.0246 -0.0790 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 0.4439 0.9269 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.8708 0.2777 -3.4810 28 1 1.4286 3.1225 1.0208 29 1 2.4321 0.8517 2.6044 30 1 3.4529 2.2115 2.0779 31 1 1.9635 3.7926 3.2741 32 1 0.9428 2.4328 3.8007 33 1 5.4081 3.8029 7.6219 34 1 6.1200 2.1914 7.3675 35 1 6.3924 3.4831 6.1736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231892532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:11 Heat of formation + Delta-G solvation = 54.108177 kcal Electronic energy + Delta-G solvation = -16802.707847 eV Core-core repulsion = 14031.718463 eV Total energy + Delta-G solvation = -2770.989384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.54701 -36.81133 -36.03186 -34.37740 -32.49539 -31.00954 -29.49544 -28.75010 -26.06170 -23.81285 -23.18420 -22.61493 -21.03810 -19.09525 -18.06092 -17.34793 -16.42270 -15.33694 -14.94112 -14.58934 -14.07747 -13.76332 -13.63546 -13.43235 -13.00658 -12.71131 -12.33995 -12.27978 -11.89564 -11.64842 -11.29211 -11.09856 -10.97790 -10.92737 -10.75944 -10.41258 -10.09711 -9.89671 -9.66272 -9.39709 -8.81383 -8.49723 -7.36839 -6.04541 -4.10608 1.15875 2.21471 2.85166 3.28036 3.35464 3.38307 3.63545 4.02367 4.38134 4.85375 5.12263 5.17748 5.18945 5.26571 5.28813 5.45134 5.62380 5.70295 5.87141 5.96525 6.20842 6.27173 6.53197 6.66447 6.83498 7.21303 7.25224 7.45273 7.71272 7.75062 7.80776 8.17884 8.20746 8.30938 8.58428 8.97424 9.54427 11.01367 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041534 B = 0.004559 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.979560 B = 6140.156836 C = 6388.466986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.065 3.935 15 C -0.030 4.030 16 C 0.201 3.799 17 N -0.488 5.488 18 C 0.164 3.836 19 C -0.061 4.061 20 N -0.393 5.393 21 O 0.075 5.925 22 H 0.013 0.987 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.010 0.990 26 H 0.087 0.913 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 3.743 13.614 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.313 5.313 14 C -0.066 4.066 15 C -0.069 4.069 16 C -0.019 4.019 17 N -0.222 5.222 18 C -0.109 4.109 19 C -0.119 4.119 20 N -0.103 5.103 21 O 0.018 5.982 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.580 2.918 14.293 14.674 hybrid contribution 0.427 0.903 -1.208 1.567 sum 2.006 3.821 13.085 13.779 Atomic orbital electron populations 1.21452 0.97399 0.97505 1.01361 1.21447 0.95135 0.98145 0.99537 1.19168 0.93089 0.91524 0.85340 0.98031 1.21167 1.31820 1.12049 0.90243 0.92150 1.24886 0.95008 0.94966 0.98967 1.69885 1.36574 1.22648 1.23574 0.86564 0.79247 0.79329 0.82680 1.20808 1.21245 1.19800 1.60758 1.48337 1.16115 1.06118 1.21866 0.95157 0.99143 0.90420 1.20407 0.96111 1.03532 0.86868 1.28979 0.94261 0.85133 0.93548 1.71934 1.09158 1.27820 1.13307 1.25901 1.00253 0.91601 0.93141 1.20106 0.90241 1.02463 0.99097 1.74615 1.00648 1.21058 1.13977 1.85291 1.38357 1.46345 1.28243 0.96745 0.92454 0.93907 0.97163 0.89472 0.92907 0.84979 0.91159 0.95241 0.87440 0.87236 0.89511 0.89656 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.24 16 2 C -0.10 -2.46 5.59 -26.73 -0.15 -2.61 16 3 C 0.22 5.16 2.30 -68.86 -0.16 5.00 16 4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 5 C -0.51 -13.29 7.26 -34.44 -0.25 -13.54 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.68 -13.10 5.65 -107.95 -0.61 -13.71 16 14 C 0.07 1.07 5.52 -3.82 -0.02 1.05 16 15 C -0.03 -0.38 6.06 -27.88 -0.17 -0.55 16 16 C 0.20 2.84 7.77 -13.06 -0.10 2.74 16 17 N -0.49 -7.29 11.55 -9.87 -0.11 -7.40 16 18 C 0.16 2.24 8.22 -156.38 -1.28 0.95 16 19 C -0.06 -0.55 10.51 36.00 0.38 -0.17 16 20 N -0.39 -5.84 12.16 30.90 0.38 -5.46 16 21 O 0.07 1.09 11.31 18.11 0.20 1.30 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 1.34 7.07 -51.93 -0.37 0.97 16 24 H 0.04 0.86 7.74 -51.93 -0.40 0.46 16 25 H 0.01 0.22 7.61 -51.93 -0.39 -0.18 16 26 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.12 8.14 -39.30 -0.32 5.80 16 29 H 0.07 1.20 7.61 -51.93 -0.40 0.81 16 30 H 0.03 0.53 7.94 -51.93 -0.41 0.11 16 31 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -28.93 295.54 -6.66 -35.58 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.08 Total: 1.43 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.50 Total: -7.77 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.28 Total: -50.63 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.93 -6.66 -35.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231892532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.691 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds