Wall clock time and date at job start Sun Mar 29 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47375 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47198 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46868 * 329.99673 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 N 1.31126 * 126.55438 * 89.99587 * 16 15 14 18 18 C 1.34490 * 105.61557 * 179.97438 * 17 16 15 19 19 C 1.50698 * 126.29078 * 180.02562 * 18 17 16 20 20 N 1.29949 * 107.42639 * 0.02562 * 18 17 16 21 21 O 1.21307 * 110.24550 * 359.69851 * 20 18 17 22 22 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 23 23 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 24 24 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 25 25 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 26 26 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 27 27 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 28 28 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 31 31 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 32 32 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 33 33 H 1.09003 * 109.47059 * 90.00047 * 19 18 17 34 34 H 1.08999 * 109.47583 * 210.00582 * 19 18 17 35 35 H 1.09004 * 109.46931 * 330.00164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 2.2395 3.5998 -4.4135 11 1 1.0977 1.5787 -5.1151 12 1 -0.0490 3.1970 -3.7198 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 7 3.9505 3.1873 5.0071 18 6 4.4381 2.6270 6.1284 19 6 5.6752 3.0557 6.8745 20 7 3.6464 1.6481 6.4503 21 8 2.7373 1.5634 5.6516 22 1 -0.3633 -1.0246 -0.0790 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 0.4439 0.9269 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.8708 0.2777 -3.4810 28 1 1.4286 3.1225 1.0208 29 1 2.4321 0.8517 2.6044 30 1 3.4529 2.2115 2.0779 31 1 1.9635 3.7926 3.2741 32 1 0.9428 2.4328 3.8007 33 1 5.4081 3.8029 7.6219 34 1 6.1200 2.1914 7.3675 35 1 6.3924 3.4831 6.1736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231892532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:11 Heat of formation + Delta-G solvation = 34.061206 kcal Electronic energy + Delta-G solvation = -16803.577149 eV Core-core repulsion = 14031.718463 eV Total energy + Delta-G solvation = -2771.858686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.62858 -38.41971 -37.13702 -35.78513 -34.07015 -32.70847 -30.66107 -29.90893 -27.88127 -25.26281 -24.76345 -23.91664 -22.14106 -20.94155 -19.18123 -18.52938 -18.21873 -16.99941 -16.27545 -16.14203 -15.41059 -15.10775 -14.97464 -14.49447 -14.43211 -13.96650 -13.77336 -13.61948 -13.32222 -13.05074 -12.79040 -12.63180 -12.44281 -12.36872 -12.23981 -12.09290 -11.82468 -11.58641 -11.27993 -10.88992 -10.75170 -10.50501 -9.05106 -8.06881 -6.19109 0.06399 1.15689 1.45199 1.47395 1.56570 1.77273 2.45596 2.67127 3.05514 3.22721 3.64602 3.97169 4.03018 4.26881 4.45403 4.56016 4.56525 4.66052 4.69374 4.83670 4.86172 4.95641 4.98634 5.01457 5.10757 5.34881 5.44197 5.59827 5.74926 5.85901 5.92634 6.31457 6.46885 6.80100 7.06018 7.10261 7.49951 8.98317 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041534 B = 0.004559 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.979560 B = 6140.156836 C = 6388.466986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.037 1.037 5 C -0.522 4.522 6 H 0.064 0.936 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.671 5.671 14 C 0.071 3.929 15 C -0.015 4.015 16 C 0.202 3.798 17 N -0.508 5.508 18 C 0.161 3.839 19 C -0.062 4.062 20 N -0.412 5.412 21 O 0.065 5.935 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.018 0.982 26 H 0.055 0.945 27 H 0.259 0.741 28 H 0.340 0.660 29 H 0.062 0.938 30 H 0.012 0.988 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 4.786 14.503 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 C 0.112 3.888 4 H -0.019 1.019 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.781 3.219 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.303 5.303 14 C -0.060 4.060 15 C -0.054 4.054 16 C -0.019 4.019 17 N -0.243 5.243 18 C -0.111 4.111 19 C -0.120 4.120 20 N -0.124 5.124 21 O 0.011 5.989 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.158 0.842 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.802 3.973 15.194 15.726 hybrid contribution 0.721 0.577 -1.424 1.697 sum 1.523 4.549 13.771 14.582 Atomic orbital electron populations 1.21319 0.95580 0.98364 1.01254 1.21338 0.96639 0.97676 0.98393 1.18947 0.90745 0.92245 0.86843 1.01947 1.21480 1.31365 1.12076 0.91081 0.91739 1.25640 0.95275 0.95608 1.01848 1.70032 1.37833 1.24041 1.23959 0.85605 0.78989 0.78146 0.79188 1.20529 1.21455 1.18853 1.60618 1.48333 1.16278 1.05044 1.21770 0.93911 0.99481 0.90817 1.20307 0.96698 1.03721 0.84704 1.29146 0.94193 0.84863 0.93648 1.71961 1.09638 1.28611 1.14117 1.26706 1.00935 0.90753 0.92732 1.20354 0.88597 1.03596 0.99408 1.74611 1.01223 1.21975 1.14622 1.85266 1.38599 1.46549 1.28470 0.95138 0.94386 0.92277 0.96287 0.92639 0.93138 0.84204 0.91916 0.97016 0.85782 0.84928 0.87460 0.88326 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.52 71.98 0.69 -3.85 16 2 C -0.10 -4.82 5.59 30.60 0.17 -4.65 16 3 C 0.22 10.61 2.30 44.17 0.10 10.71 16 4 H -0.04 -2.04 7.71 -2.39 -0.02 -2.06 16 5 C -0.52 -26.90 7.26 25.60 0.19 -26.71 16 6 H 0.06 3.21 7.60 -2.91 -0.02 3.19 16 7 C 0.02 0.82 5.30 84.65 0.45 1.27 16 8 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 9 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.67 -25.12 5.65 -495.44 -2.80 -27.92 16 14 C 0.07 2.29 5.52 86.30 0.48 2.76 16 15 C -0.02 -0.36 6.06 29.85 0.18 -0.18 16 16 C 0.20 5.42 7.77 88.38 0.69 6.11 16 17 N -0.51 -14.56 11.55 -303.20 -3.50 -18.06 16 18 C 0.16 4.19 8.22 138.46 1.14 5.32 16 19 C -0.06 -0.98 10.51 71.24 0.75 -0.23 16 20 N -0.41 -11.81 12.16 -60.32 -0.73 -12.55 16 21 O 0.07 1.85 11.31 74.88 0.85 2.70 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 1.72 7.07 -2.39 -0.02 1.71 16 24 H 0.06 2.26 7.74 -2.39 -0.02 2.25 16 25 H 0.02 0.83 7.61 -2.39 -0.02 0.81 16 26 H 0.06 3.00 6.06 -2.39 -0.01 2.98 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.34 11.98 8.14 -89.70 -0.73 11.25 16 29 H 0.06 2.11 7.61 -2.39 -0.02 2.09 16 30 H 0.01 0.42 7.94 -2.39 -0.02 0.40 16 31 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -62.04 295.54 1.26 -60.78 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.36 Total: 12.01 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.82 Total: -9.45 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -6.79 Total: -110.32 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.85 Total: 2.70 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.04 1.26 -60.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231892532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.839 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds