Wall clock time and date at job start Sun Mar 29 2020 22:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 N 1.30002 * 126.21526 * 60.01871 * 4 2 1 6 6 O 1.21276 * 110.49851 * 180.02562 * 5 4 2 7 7 C 1.34049 * 109.74681 * 0.02562 * 6 5 4 8 8 N 1.37370 * 126.67140 * 180.02562 * 7 6 5 9 9 C 1.46509 * 119.99556 * 359.96866 * 8 7 6 10 10 C 1.52992 * 109.46956 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47338 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47524 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99860 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00471 * 0.02562 * 14 12 11 16 16 Si 1.86812 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46812 * 90.00296 * 16 14 12 18 18 H 1.48496 * 109.46985 * 210.00392 * 16 14 12 19 19 H 1.48495 * 109.46756 * 330.00142 * 16 14 12 20 20 N 1.32154 * 106.66399 * 359.73326 * 7 6 5 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 28 28 H 0.96996 * 120.00695 * 179.97438 * 8 7 6 29 29 H 1.08990 * 109.47122 * 300.00361 * 9 8 7 30 30 H 1.09005 * 109.46452 * 60.00240 * 9 8 7 31 31 H 1.09004 * 109.47401 * 300.00401 * 10 9 8 32 32 H 1.09005 * 109.47391 * 60.00758 * 10 9 8 33 33 H 1.09004 * 109.47009 * 300.00405 * 11 10 9 34 34 H 1.09005 * 109.46454 * 59.99947 * 11 10 9 35 35 H 0.97003 * 120.00623 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7943 -0.3728 -2.4632 6 8 2.3378 -1.1424 -3.2268 7 6 2.9984 -2.0791 -2.5318 8 7 3.7328 -3.1186 -3.0486 9 6 3.8494 -3.2827 -4.4998 10 6 4.7136 -4.5073 -4.8067 11 6 4.8359 -4.6784 -6.3222 12 6 5.6877 -5.8842 -6.6246 13 1 6.1002 -6.4702 -5.8167 14 6 5.9394 -6.2398 -7.9326 15 7 5.4367 -5.5266 -8.9165 16 14 6.9948 -7.7350 -8.3075 17 1 6.1305 -8.9384 -8.4075 18 1 7.7066 -7.5284 -9.5942 19 1 7.9861 -7.9266 -7.2186 20 7 2.8111 -1.8045 -1.2527 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 4.1742 -3.7440 -2.4528 29 1 2.8578 -3.4211 -4.9305 30 1 4.3117 -2.3942 -4.9299 31 1 5.7053 -4.3694 -4.3758 32 1 4.2509 -5.3956 -4.3767 33 1 3.8443 -4.8161 -6.7535 34 1 5.2988 -3.7900 -6.7519 35 1 5.6141 -5.7766 -9.8368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265635784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:04 Heat of formation + Delta-G solvation = 45.061533 kcal Electronic energy + Delta-G solvation = -16268.455979 eV Core-core repulsion = 13497.074303 eV Total energy + Delta-G solvation = -2771.381676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.10561 -37.11017 -36.76306 -34.41318 -33.47077 -31.72829 -30.04591 -27.42810 -26.72187 -24.55560 -23.46947 -22.88184 -20.56841 -20.09492 -17.85985 -17.81466 -16.86587 -16.33377 -15.05764 -14.91946 -14.83735 -14.50727 -14.24409 -13.59936 -12.59017 -12.46179 -12.44029 -12.18272 -12.02071 -11.80973 -11.72453 -11.35139 -11.20216 -10.96137 -10.88764 -10.68403 -10.63095 -10.46934 -9.90666 -9.59878 -9.22363 -8.43859 -8.24232 -6.08505 -4.11938 1.60117 2.33260 2.55108 3.27439 3.34209 3.36777 3.50064 4.03480 4.39287 4.52954 4.84913 4.90550 5.05339 5.27779 5.36917 5.37938 5.50764 5.54667 5.56790 5.65834 5.89000 5.90631 5.96017 6.00475 6.20714 6.40333 6.44847 6.82267 6.89666 7.28647 7.53772 7.64417 7.89142 8.29570 8.56736 8.94404 9.53001 11.02722 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.083235 B = 0.003337 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.316529 B = 8390.000713 C = 8524.655432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.203 3.797 5 N -0.403 5.403 6 O 0.033 5.967 7 C 0.436 3.564 8 N -0.661 5.661 9 C 0.115 3.885 10 C -0.120 4.120 11 C 0.025 3.975 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.553 5.553 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.429 0.571 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 9.681 15.865 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.126 5.126 6 O -0.011 6.011 7 C 0.127 3.873 8 N -0.311 5.311 9 C -0.007 4.007 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.301 5.301 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.270 0.730 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.298 10.323 15.582 20.066 hybrid contribution 0.912 -1.314 -0.328 1.633 sum -6.387 9.009 15.254 18.832 Atomic orbital electron populations 1.21834 0.93130 1.02495 1.02731 1.19484 0.96182 0.95217 0.91322 1.21832 1.01458 0.94172 1.02730 1.25297 0.95374 0.92143 0.94339 1.74475 1.20988 1.14776 1.02391 1.85364 1.50817 1.30559 1.34373 1.24364 0.89965 0.88112 0.84871 1.43796 1.52193 1.25825 1.09303 1.21997 1.01790 1.01200 0.75741 1.21903 0.97819 0.94045 1.02076 1.19034 0.97597 0.97422 0.87230 1.21175 1.31510 1.11621 0.91977 0.92539 1.25018 0.96028 0.96896 0.96436 1.69951 1.44886 1.39159 0.99240 0.86570 0.80508 0.83007 0.77786 1.20615 1.21173 1.19846 1.72283 1.25384 1.18260 1.14128 0.92348 0.91354 0.91836 0.88364 0.91355 0.92349 0.91837 0.73019 0.91162 0.91157 0.92187 0.92188 0.96124 0.96115 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 4 C 0.20 2.90 6.71 -156.48 -1.05 1.85 16 5 N -0.40 -6.33 12.14 31.15 0.38 -5.95 16 6 O 0.03 0.53 11.07 17.06 0.19 0.72 16 7 C 0.44 6.67 9.10 -87.54 -0.80 5.88 16 8 N -0.66 -9.10 5.66 -62.50 -0.35 -9.45 16 9 C 0.12 1.75 6.07 -4.04 -0.02 1.72 16 10 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.11 9.11 -34.44 -0.31 -14.43 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 N -0.55 -8.50 11.59 -13.04 -0.15 -8.65 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.43 5.17 8.59 -40.82 -0.35 4.82 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -29.99 303.53 -7.23 -37.22 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.39 Total: -1.64 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.19 Total: -7.50 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.61 Total: -49.37 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: 0.19 Total: 0.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.99 -7.23 -37.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265635784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.279 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds