Wall clock time and date at job start Sun Mar 29 2020 22:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 N 1.30002 * 126.21526 * 60.01871 * 4 2 1 6 6 O 1.21276 * 110.49851 * 180.02562 * 5 4 2 7 7 C 1.34049 * 109.74681 * 0.02562 * 6 5 4 8 8 N 1.37370 * 126.67140 * 180.02562 * 7 6 5 9 9 C 1.46509 * 119.99556 * 359.96866 * 8 7 6 10 10 C 1.52992 * 109.46956 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47338 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47524 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99860 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00471 * 0.02562 * 14 12 11 16 16 Si 1.86812 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46812 * 90.00296 * 16 14 12 18 18 H 1.48496 * 109.46985 * 210.00392 * 16 14 12 19 19 H 1.48495 * 109.46756 * 330.00142 * 16 14 12 20 20 N 1.32154 * 106.66399 * 359.73326 * 7 6 5 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 28 28 H 0.96996 * 120.00695 * 179.97438 * 8 7 6 29 29 H 1.08990 * 109.47122 * 300.00361 * 9 8 7 30 30 H 1.09005 * 109.46452 * 60.00240 * 9 8 7 31 31 H 1.09004 * 109.47401 * 300.00401 * 10 9 8 32 32 H 1.09005 * 109.47391 * 60.00758 * 10 9 8 33 33 H 1.09004 * 109.47009 * 300.00405 * 11 10 9 34 34 H 1.09005 * 109.46454 * 59.99947 * 11 10 9 35 35 H 0.97003 * 120.00623 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7943 -0.3728 -2.4632 6 8 2.3378 -1.1424 -3.2268 7 6 2.9984 -2.0791 -2.5318 8 7 3.7328 -3.1186 -3.0486 9 6 3.8494 -3.2827 -4.4998 10 6 4.7136 -4.5073 -4.8067 11 6 4.8359 -4.6784 -6.3222 12 6 5.6877 -5.8842 -6.6246 13 1 6.1002 -6.4702 -5.8167 14 6 5.9394 -6.2398 -7.9326 15 7 5.4367 -5.5266 -8.9165 16 14 6.9948 -7.7350 -8.3075 17 1 6.1305 -8.9384 -8.4075 18 1 7.7066 -7.5284 -9.5942 19 1 7.9861 -7.9266 -7.2186 20 7 2.8111 -1.8045 -1.2527 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 4.1742 -3.7440 -2.4528 29 1 2.8578 -3.4211 -4.9305 30 1 4.3117 -2.3942 -4.9299 31 1 5.7053 -4.3694 -4.3758 32 1 4.2509 -5.3956 -4.3767 33 1 3.8443 -4.8161 -6.7535 34 1 5.2988 -3.7900 -6.7519 35 1 5.6141 -5.7766 -9.8368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265635784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:04 Heat of formation + Delta-G solvation = 25.124865 kcal Electronic energy + Delta-G solvation = -16269.320498 eV Core-core repulsion = 13497.074303 eV Total energy + Delta-G solvation = -2772.246195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.26925 -38.37600 -37.73020 -35.87380 -34.92197 -33.35455 -31.38668 -28.43536 -28.10980 -25.71087 -24.99010 -24.10242 -22.18948 -21.12455 -19.04612 -18.96582 -18.53804 -17.84919 -16.53930 -16.31827 -16.06650 -15.85492 -15.11517 -14.37122 -14.32146 -14.10604 -13.78059 -13.34240 -13.14988 -12.93677 -12.67500 -12.60530 -12.56895 -12.40090 -12.31589 -12.09554 -11.75195 -11.73724 -11.48870 -11.38445 -11.20644 -10.53778 -9.43090 -8.19088 -6.29422 0.42863 1.15573 1.41853 1.43163 1.43398 1.54312 2.35023 2.43915 3.03127 3.15551 3.54732 3.98927 4.08821 4.10847 4.17005 4.25836 4.51207 4.73484 4.74556 4.81088 4.88882 4.91452 4.95437 5.04871 5.09118 5.17017 5.27530 5.35466 5.52116 5.64479 5.72773 5.85987 6.19131 6.24233 6.88179 7.39834 7.40548 8.92680 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.083235 B = 0.003337 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.316529 B = 8390.000713 C = 8524.655432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.139 4.139 4 C 0.205 3.795 5 N -0.421 5.421 6 O 0.015 5.985 7 C 0.432 3.568 8 N -0.648 5.648 9 C 0.129 3.871 10 C -0.103 4.103 11 C 0.025 3.975 12 C -0.541 4.541 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.262 1.262 20 N -0.563 5.563 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.051 0.949 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.439 0.561 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 9.400 17.715 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.197 4.197 4 C -0.070 4.070 5 N -0.147 5.147 6 O -0.026 6.026 7 C 0.123 3.877 8 N -0.300 5.300 9 C 0.006 3.994 10 C -0.141 4.141 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.186 1.186 20 N -0.311 5.311 21 H 0.069 0.931 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.129 0.871 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.281 0.719 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.095 10.025 17.445 21.335 hybrid contribution 0.828 -1.194 -0.865 1.691 sum -6.267 8.831 16.580 19.803 Atomic orbital electron populations 1.21818 0.91907 1.02312 1.03644 1.19788 0.97146 0.95752 0.89910 1.21816 1.00960 0.93263 1.03644 1.26093 0.94173 0.91559 0.95146 1.74478 1.21953 1.15297 1.03016 1.85339 1.51329 1.30993 1.34897 1.24505 0.89979 0.88163 0.85066 1.43559 1.51963 1.25703 1.08739 1.21678 1.01180 0.99945 0.76595 1.21594 0.99101 0.95656 0.97794 1.18934 0.95591 0.95594 0.91206 1.21688 1.31478 1.12428 0.92350 0.91723 1.25941 0.97444 0.99977 0.96480 1.70082 1.46523 1.41106 0.99629 0.85489 0.78884 0.79245 0.77687 1.19949 1.21121 1.18614 1.72301 1.25925 1.18888 1.14032 0.93074 0.88384 0.92963 0.87149 0.88383 0.93088 0.92965 0.71851 0.91250 0.91256 0.91195 0.91168 0.98348 0.98342 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.18 71.98 0.66 -1.52 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -2.19 9.17 71.98 0.66 -1.53 16 4 C 0.20 5.65 6.71 138.50 0.93 6.58 16 5 N -0.42 -13.11 12.14 -58.81 -0.71 -13.83 16 6 O 0.02 0.49 11.07 71.11 0.79 1.28 16 7 C 0.43 12.90 9.10 179.27 1.63 14.53 16 8 N -0.65 -17.05 5.66 -462.65 -2.62 -19.67 16 9 C 0.13 3.83 6.07 86.37 0.52 4.35 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 11 C 0.02 1.18 4.97 29.85 0.15 1.33 16 12 C -0.54 -29.05 9.11 25.60 0.23 -28.81 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -55.27 13.29 21.44 0.28 -54.98 16 16 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 N -0.56 -16.73 11.59 -311.95 -3.62 -20.35 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.44 9.79 8.59 -92.71 -0.80 8.99 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.00 -0.10 8.14 -2.38 -0.02 -0.11 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -64.17 303.53 1.80 -62.37 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.28 Total: 8.51 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.37 Total: -8.21 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -6.67 Total: -108.83 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: 0.79 Total: 1.28 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.17 1.80 -62.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265635784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.497 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds