Wall clock time and date at job start Sun Mar 29 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47195 * 2 1 4 4 N 1.30271 * 126.28572 * 90.02625 * 3 2 1 5 5 N 1.28663 * 109.38539 * 179.97438 * 4 3 2 6 6 C 1.30279 * 109.37797 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.27871 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47145 * 90.02948 * 7 6 5 9 9 C 1.46901 * 110.99548 * 293.94894 * 8 7 6 10 10 C 1.53002 * 109.46744 * 163.99150 * 9 8 7 11 11 C 1.46902 * 110.99697 * 169.99952 * 8 7 6 12 12 C 1.50701 * 109.46883 * 284.30856 * 11 8 7 13 13 H 1.07995 * 119.99994 * 4.67636 * 12 11 8 14 14 C 1.37881 * 119.99851 * 184.66734 * 12 11 8 15 15 N 1.31508 * 119.99947 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99637 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47177 * 60.00831 * 16 14 12 18 18 H 1.48502 * 109.46805 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47587 * 300.00276 * 16 14 12 20 20 O 1.34358 * 107.43585 * 359.76152 * 6 5 4 21 21 H 1.09000 * 109.46517 * 300.00123 * 1 2 3 22 22 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46937 * 59.99577 * 1 2 3 24 24 H 1.08999 * 109.47374 * 120.00169 * 2 1 3 25 25 H 1.09000 * 109.47259 * 239.99907 * 2 1 3 26 26 H 1.09006 * 109.46381 * 210.02557 * 7 6 5 27 27 H 1.08993 * 109.47021 * 330.02451 * 7 6 5 28 28 H 1.09003 * 109.47191 * 283.98532 * 9 8 7 29 29 H 1.08993 * 109.47011 * 43.99513 * 9 8 7 30 30 H 1.09007 * 109.47518 * 59.30657 * 10 9 8 31 31 H 1.09007 * 109.47239 * 179.30493 * 10 9 8 32 32 H 1.09005 * 109.47266 * 299.30777 * 10 9 8 33 33 H 1.08993 * 109.47384 * 44.31406 * 11 8 7 34 34 H 1.09007 * 109.46795 * 164.31452 * 11 8 7 35 35 H 0.97004 * 119.99636 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2898 2.1475 1.0501 5 7 2.7005 3.3081 0.6761 6 6 2.7196 3.3610 -0.6255 7 6 3.1380 4.5414 -1.4639 8 7 4.5793 4.4620 -1.7366 9 6 5.3581 4.6175 -0.5008 10 6 6.7925 4.1412 -0.7388 11 6 4.9806 5.4565 -2.7405 12 6 4.5458 4.9941 -4.1074 13 1 3.9582 4.0940 -4.2113 14 6 4.8981 5.7204 -5.2252 15 7 5.6139 6.8163 -5.0986 16 14 4.3585 5.1476 -6.9194 17 1 2.8754 5.0985 -6.9762 18 1 4.8625 6.0949 -7.9459 19 1 4.9090 3.7939 -7.1829 20 8 2.3034 2.1683 -1.0831 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.5889 4.5310 -2.4055 27 1 2.9202 5.4642 -0.9264 28 1 5.3679 5.6672 -0.2071 29 1 4.9045 4.0225 0.2918 30 1 7.2421 4.7280 -1.5399 31 1 7.3738 4.2681 0.1746 32 1 6.7837 3.0883 -1.0206 33 1 4.5093 6.4127 -2.5134 34 1 6.0644 5.5725 -2.7240 35 1 5.8620 7.3271 -5.8851 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266930474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:31 Heat of formation + Delta-G solvation = 32.922485 kcal Electronic energy + Delta-G solvation = -17126.485591 eV Core-core repulsion = 14354.577526 eV Total energy + Delta-G solvation = -2771.908065 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.93642 -37.22522 -35.85514 -34.47661 -32.72309 -31.24043 -29.73585 -27.47068 -25.46505 -24.49563 -22.68804 -22.17864 -21.72027 -19.95359 -17.19358 -16.81011 -16.47742 -15.38005 -15.23006 -14.85221 -14.35179 -14.08855 -13.77417 -13.38319 -12.92408 -12.38627 -12.18689 -12.13989 -11.97508 -11.61028 -11.55015 -11.42220 -11.24316 -11.14635 -10.89357 -10.69479 -10.60050 -10.34109 -9.82552 -9.43579 -9.17887 -8.49031 -7.50839 -6.09093 -4.11420 1.41476 2.51418 2.62218 3.29830 3.34461 3.37233 3.98689 4.36684 4.53677 4.78502 4.86955 4.91720 5.11965 5.26975 5.34099 5.50010 5.65981 5.67320 5.71552 5.77863 5.80996 5.93555 5.98400 6.07840 6.19236 6.32269 6.53679 6.76395 7.04851 7.19282 7.70557 7.92725 8.02868 8.38660 8.56735 8.95060 9.53195 11.01211 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.006377 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.887588 B = 4389.506828 C = 5209.085577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.146 3.854 4 N -0.292 5.292 5 N -0.300 5.300 6 C 0.199 3.801 7 C 0.148 3.852 8 N -0.532 5.532 9 C 0.042 3.958 10 C -0.141 4.141 11 C 0.193 3.807 12 C -0.513 4.513 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.214 6.214 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.054 0.946 33 H -0.004 1.004 34 H 0.045 0.955 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -10.131 8.122 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 C -0.065 4.065 4 N -0.139 5.139 5 N -0.147 5.147 6 C -0.012 4.012 7 C 0.019 3.981 8 N -0.259 5.259 9 C -0.086 4.086 10 C -0.199 4.199 11 C 0.069 3.931 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 O -0.092 6.092 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.534 -10.071 9.044 15.030 hybrid contribution -0.432 0.238 -1.845 1.909 sum -6.966 -9.833 7.199 14.037 Atomic orbital electron populations 1.21793 0.92960 1.03024 1.03092 1.20070 0.96900 0.83792 1.05464 1.27900 1.00458 0.98055 0.80121 1.74276 1.14985 0.98733 1.25892 1.74379 1.17866 1.12882 1.09580 1.28420 0.95024 0.86614 0.91180 1.20554 0.92979 0.86785 0.97810 1.62172 0.99711 1.54400 1.09592 1.22158 0.95021 0.98996 0.92460 1.21722 0.95419 1.01855 1.00887 1.19853 0.97289 0.87343 0.88619 1.21114 1.33882 1.09725 0.90399 0.91895 1.24967 0.95151 0.94919 0.99322 1.69936 1.37667 1.15877 1.30112 0.86556 0.78923 0.78528 0.83393 1.20239 1.21303 1.20164 1.84832 1.63177 1.23325 1.37869 0.91744 0.90743 0.91988 0.87469 0.88566 0.86720 0.90773 0.95148 0.91601 0.91808 0.93341 0.92691 0.98649 0.93662 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.41 16 3 C 0.15 2.20 7.73 -12.94 -0.10 2.10 16 4 N -0.29 -5.08 12.22 32.55 0.40 -4.69 16 5 N -0.30 -5.64 11.12 32.55 0.36 -5.28 16 6 C 0.20 3.68 7.15 -12.94 -0.09 3.59 16 7 C 0.15 2.83 5.41 -4.97 -0.03 2.80 16 8 N -0.53 -11.35 4.37 -237.51 -1.04 -12.39 16 9 C 0.04 0.80 5.55 -3.82 -0.02 0.78 16 10 C -0.14 -2.51 9.99 37.16 0.37 -2.14 16 11 C 0.19 4.80 4.59 -4.97 -0.02 4.78 16 12 C -0.51 -13.85 8.61 -34.44 -0.30 -14.14 16 13 H 0.06 1.69 7.66 -52.49 -0.40 1.29 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 O -0.21 -3.76 10.87 5.39 0.06 -3.70 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 2.22 7.32 -51.93 -0.38 1.84 16 27 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 28 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 29 H 0.07 1.25 6.08 -51.93 -0.32 0.93 16 30 H 0.06 1.22 6.52 -51.92 -0.34 0.88 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.00 -0.11 8.00 -51.93 -0.42 -0.53 16 34 H 0.05 1.20 6.24 -51.93 -0.32 0.88 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -30.54 296.98 -5.24 -35.78 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.11 Total: -3.23 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.10 Total: -1.98 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.46 Total: -47.42 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: 0.06 Total: -3.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.54 -5.24 -35.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266930474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds