Wall clock time and date at job start Sun Mar 29 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47195 * 2 1 4 4 N 1.30271 * 126.28572 * 90.02625 * 3 2 1 5 5 N 1.28663 * 109.38539 * 179.97438 * 4 3 2 6 6 C 1.30279 * 109.37797 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.27871 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47145 * 90.02948 * 7 6 5 9 9 C 1.46901 * 110.99548 * 293.94894 * 8 7 6 10 10 C 1.53002 * 109.46744 * 163.99150 * 9 8 7 11 11 C 1.46902 * 110.99697 * 169.99952 * 8 7 6 12 12 C 1.50701 * 109.46883 * 284.30856 * 11 8 7 13 13 H 1.07995 * 119.99994 * 4.67636 * 12 11 8 14 14 C 1.37881 * 119.99851 * 184.66734 * 12 11 8 15 15 N 1.31508 * 119.99947 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99637 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47177 * 60.00831 * 16 14 12 18 18 H 1.48502 * 109.46805 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47587 * 300.00276 * 16 14 12 20 20 O 1.34358 * 107.43585 * 359.76152 * 6 5 4 21 21 H 1.09000 * 109.46517 * 300.00123 * 1 2 3 22 22 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46937 * 59.99577 * 1 2 3 24 24 H 1.08999 * 109.47374 * 120.00169 * 2 1 3 25 25 H 1.09000 * 109.47259 * 239.99907 * 2 1 3 26 26 H 1.09006 * 109.46381 * 210.02557 * 7 6 5 27 27 H 1.08993 * 109.47021 * 330.02451 * 7 6 5 28 28 H 1.09003 * 109.47191 * 283.98532 * 9 8 7 29 29 H 1.08993 * 109.47011 * 43.99513 * 9 8 7 30 30 H 1.09007 * 109.47518 * 59.30657 * 10 9 8 31 31 H 1.09007 * 109.47239 * 179.30493 * 10 9 8 32 32 H 1.09005 * 109.47266 * 299.30777 * 10 9 8 33 33 H 1.08993 * 109.47384 * 44.31406 * 11 8 7 34 34 H 1.09007 * 109.46795 * 164.31452 * 11 8 7 35 35 H 0.97004 * 119.99636 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2898 2.1475 1.0501 5 7 2.7005 3.3081 0.6761 6 6 2.7196 3.3610 -0.6255 7 6 3.1380 4.5414 -1.4639 8 7 4.5793 4.4620 -1.7366 9 6 5.3581 4.6175 -0.5008 10 6 6.7925 4.1412 -0.7388 11 6 4.9806 5.4565 -2.7405 12 6 4.5458 4.9941 -4.1074 13 1 3.9582 4.0940 -4.2113 14 6 4.8981 5.7204 -5.2252 15 7 5.6139 6.8163 -5.0986 16 14 4.3585 5.1476 -6.9194 17 1 2.8754 5.0985 -6.9762 18 1 4.8625 6.0949 -7.9459 19 1 4.9090 3.7939 -7.1829 20 8 2.3034 2.1683 -1.0831 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.5889 4.5310 -2.4055 27 1 2.9202 5.4642 -0.9264 28 1 5.3679 5.6672 -0.2071 29 1 4.9045 4.0225 0.2918 30 1 7.2421 4.7280 -1.5399 31 1 7.3738 4.2681 0.1746 32 1 6.7837 3.0883 -1.0206 33 1 4.5093 6.4127 -2.5134 34 1 6.0644 5.5725 -2.7240 35 1 5.8620 7.3271 -5.8851 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266930474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:31 Heat of formation + Delta-G solvation = 9.137020 kcal Electronic energy + Delta-G solvation = -17127.517006 eV Core-core repulsion = 14354.577526 eV Total energy + Delta-G solvation = -2772.939480 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.27689 -38.89748 -37.21734 -35.43002 -34.74795 -32.60786 -31.28624 -29.17255 -27.06623 -25.56272 -24.53872 -23.59235 -22.81694 -21.62435 -18.73064 -18.35910 -18.13194 -16.89989 -16.65604 -16.32804 -15.82198 -15.44162 -15.17975 -14.80570 -14.19643 -13.73907 -13.72519 -13.54176 -13.32618 -13.04382 -12.93549 -12.77499 -12.68793 -12.63885 -12.43370 -12.23792 -12.14410 -11.86968 -11.63865 -11.35909 -10.61078 -10.54761 -9.24410 -8.18776 -6.28569 0.10023 1.22319 1.30700 1.43857 1.45891 1.53811 2.41569 2.75868 3.11803 3.21067 3.41267 3.82342 4.11007 4.15519 4.20066 4.22321 4.31737 4.35283 4.48257 4.58058 4.68841 4.80757 4.84621 4.93212 4.94720 5.01962 5.17237 5.21863 5.27751 5.28429 5.65156 6.02466 6.15526 6.45549 6.84376 7.22175 7.40605 8.91414 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.006377 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.887588 B = 4389.506828 C = 5209.085577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.165 3.835 4 N -0.319 5.319 5 N -0.309 5.309 6 C 0.187 3.813 7 C 0.153 3.847 8 N -0.540 5.540 9 C 0.044 3.956 10 C -0.135 4.135 11 C 0.209 3.791 12 C -0.525 4.525 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.271 1.271 20 O -0.226 6.226 21 H 0.055 0.945 22 H 0.106 0.894 23 H 0.052 0.948 24 H 0.129 0.871 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.051 0.949 33 H -0.023 1.023 34 H 0.024 0.976 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 -12.061 8.095 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.046 4.046 4 N -0.165 5.165 5 N -0.157 5.157 6 C -0.025 4.025 7 C 0.024 3.976 8 N -0.267 5.267 9 C -0.084 4.084 10 C -0.193 4.193 11 C 0.084 3.916 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.190 4.190 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.197 1.197 20 O -0.105 6.105 21 H 0.074 0.926 22 H 0.124 0.876 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.070 0.930 33 H -0.006 1.006 34 H 0.042 0.958 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.416 -12.018 9.050 16.773 hybrid contribution -0.200 0.753 -1.747 1.913 sum -7.616 -11.265 7.303 15.435 Atomic orbital electron populations 1.21798 0.91539 1.04851 1.02242 1.20539 0.97896 0.80480 1.07495 1.29102 0.97532 0.99153 0.78835 1.74245 1.16785 0.98732 1.26775 1.74318 1.17867 1.13850 1.09624 1.28062 0.96447 0.86964 0.91036 1.20415 0.91492 0.87850 0.97860 1.62066 1.01359 1.53063 1.10193 1.22197 0.95468 0.99233 0.91530 1.21682 0.94850 1.01077 1.01668 1.19491 0.95689 0.87283 0.89187 1.21401 1.33771 1.09638 0.91552 0.92023 1.25803 0.95098 0.94916 1.03227 1.70054 1.38776 1.17021 1.31220 0.85512 0.78918 0.78064 0.78592 1.19184 1.20943 1.19663 1.84841 1.63447 1.23280 1.38883 0.92568 0.87571 0.92884 0.85277 0.86599 0.87409 0.89862 0.95020 0.91108 0.93742 0.90344 0.93006 1.00560 0.95777 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.03 -0.41 6.56 29.85 0.20 -0.22 16 3 C 0.17 4.70 7.73 88.34 0.68 5.38 16 4 N -0.32 -10.78 12.22 -165.50 -2.02 -12.80 16 5 N -0.31 -11.48 11.12 -165.50 -1.84 -13.32 16 6 C 0.19 6.86 7.15 88.34 0.63 7.49 16 7 C 0.15 5.89 5.41 85.56 0.46 6.35 16 8 N -0.54 -23.29 4.37 -905.36 -3.96 -27.25 16 9 C 0.04 1.66 5.55 86.30 0.48 2.14 16 10 C -0.14 -4.75 9.99 71.98 0.72 -4.03 16 11 C 0.21 10.63 4.59 85.56 0.39 11.03 16 12 C -0.53 -28.65 8.61 25.60 0.22 -28.43 16 13 H 0.06 3.31 7.66 -2.91 -0.02 3.29 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 16 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 O -0.23 -7.73 10.87 -3.63 -0.04 -7.77 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.11 4.23 7.32 -2.38 -0.02 4.22 16 27 H 0.08 3.01 8.12 -2.39 -0.02 2.99 16 28 H 0.03 1.19 8.05 -2.39 -0.02 1.17 16 29 H 0.07 2.64 6.08 -2.39 -0.01 2.63 16 30 H 0.04 1.72 6.52 -2.38 -0.02 1.70 16 31 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 33 H -0.02 -1.25 8.00 -2.39 -0.02 -1.27 16 34 H 0.02 1.33 6.24 -2.38 -0.01 1.31 16 35 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -65.38 296.98 0.48 -64.90 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.07 Total: 5.65 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.96 Total: -0.59 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -7.54 Total: -107.27 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.04 Total: -7.77 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.38 0.48 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266930474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.032 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds