Wall clock time and date at job start Sun Mar 29 2020 22:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00106 * 293.95323 * 9 8 7 11 11 C 1.46904 * 111.00369 * 169.99373 * 9 8 7 12 12 C 1.50695 * 109.47201 * 189.99999 * 11 9 8 13 13 H 1.08000 * 120.00239 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99708 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00377 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00151 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46902 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99761 * 16 14 12 19 19 H 1.48503 * 109.46910 * 240.00163 * 16 14 12 20 20 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 21 21 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 22 22 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 23 23 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 24 24 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 25 25 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 26 26 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 27 27 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 28 28 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 29 29 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 30 30 H 1.08997 * 109.47009 * 59.99557 * 10 9 8 31 31 H 1.08998 * 109.46627 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46779 * 299.99824 * 10 9 8 33 33 H 1.08997 * 109.47094 * 310.00434 * 11 9 8 34 34 H 1.09004 * 109.46297 * 70.00073 * 11 9 8 35 35 H 0.97000 * 120.00294 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 7 6.9225 -2.8087 -2.8276 10 6 5.9495 -3.6734 -3.5085 11 6 8.2694 -3.3933 -2.8739 12 6 8.7544 -3.4250 -4.3003 13 1 8.1253 -3.0482 -5.0932 14 6 10.0015 -3.9351 -4.5932 15 7 10.7678 -4.3936 -3.6277 16 14 10.6031 -3.9738 -6.3613 17 1 9.5605 -3.4032 -7.2515 18 1 11.8475 -3.1720 -6.4784 19 1 10.8793 -5.3775 -6.7595 20 7 2.3030 -1.0840 -0.0002 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8897 0.5142 24 1 5.5843 -0.8849 0.5130 25 1 4.6208 -2.3815 0.5141 26 1 4.4380 -2.2655 -1.9560 27 1 5.4015 -0.7690 -1.9571 28 1 7.2990 -1.9909 -0.9292 29 1 6.3349 -3.4871 -0.9284 30 1 4.9753 -3.1847 -3.5209 31 1 6.2785 -3.8549 -4.5317 32 1 5.8732 -4.6225 -2.9780 33 1 8.9486 -2.7892 -2.2725 34 1 8.2386 -4.4084 -2.4780 35 1 11.6453 -4.7521 -3.8338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268623399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:22 Heat of formation + Delta-G solvation = 58.799270 kcal Electronic energy + Delta-G solvation = -16407.103030 eV Core-core repulsion = 13636.317067 eV Total energy + Delta-G solvation = -2770.785963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.66769 -37.23759 -36.18269 -34.70532 -32.69123 -31.57763 -29.35952 -27.59733 -26.74783 -24.73194 -23.57501 -21.98849 -21.03409 -20.07383 -18.16577 -17.47074 -16.34965 -15.47532 -15.26329 -14.76469 -14.17780 -14.13711 -13.82580 -13.59121 -13.31484 -12.89408 -12.51169 -12.39787 -11.95236 -11.79584 -11.41693 -11.37994 -11.14407 -11.06950 -10.88841 -10.63483 -10.53880 -10.31508 -9.98413 -9.78256 -9.19329 -8.44688 -7.26843 -6.03589 -4.04704 1.04498 2.09870 2.72533 3.30855 3.38332 3.43311 3.51540 3.90983 4.41594 4.70462 4.81892 4.93624 5.11102 5.17437 5.26761 5.30765 5.36842 5.53288 5.59288 5.71845 5.74522 5.89138 5.99795 6.14624 6.25686 6.40057 6.44531 6.75773 7.27454 7.32932 7.79535 8.06514 8.07104 8.17931 8.53887 9.03320 9.59675 11.07393 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.003651 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.367111 B = 7667.353591 C = 7778.145268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.391 5.391 4 O 0.075 5.925 5 C 0.198 3.802 6 C -0.030 4.030 7 C -0.113 4.113 8 C 0.057 3.943 9 N -0.542 5.542 10 C 0.035 3.965 11 C 0.192 3.808 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 N -0.488 5.488 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.011 0.989 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.912 6.164 8.389 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.101 5.101 4 O 0.018 5.982 5 C -0.022 4.022 6 C -0.069 4.069 7 C -0.152 4.152 8 C -0.072 4.072 9 N -0.266 5.266 10 C -0.114 4.114 11 C 0.067 3.933 12 C -0.546 4.546 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 N -0.222 5.222 21 H 0.106 0.894 22 H 0.109 0.891 23 H 0.103 0.897 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.355 7.040 8.170 19.591 hybrid contribution 0.568 -0.911 -0.474 1.174 sum -15.787 6.129 7.696 18.601 Atomic orbital electron populations 1.20115 0.83110 1.04471 1.04266 1.25909 1.00575 0.83711 1.00635 1.74624 0.89503 1.24038 1.21962 1.85293 1.22211 1.24988 1.65688 1.28979 0.97135 0.81991 0.94121 1.20372 0.87538 0.97951 1.01048 1.21644 0.98748 1.02160 0.92613 1.21990 0.95478 0.97596 0.92101 1.62084 1.04653 1.47632 1.12273 1.22259 0.94765 0.93778 1.00552 1.19747 0.82979 0.92710 0.97866 1.21211 1.00861 1.39640 0.92840 0.91793 1.24994 0.96722 0.95495 0.97464 1.69966 1.10297 1.41944 1.31684 0.86447 0.78752 0.77537 0.84727 1.19652 1.20991 1.21132 1.71922 0.99822 1.29320 1.21137 0.89366 0.89112 0.89654 0.87707 0.87251 0.91189 0.90423 0.90943 0.95582 0.93570 0.90758 0.97036 0.95136 0.99084 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.16 2.02 8.22 -156.37 -1.28 0.74 16 3 N -0.39 -5.32 12.16 30.90 0.38 -4.95 16 4 O 0.08 0.99 11.31 18.11 0.20 1.20 16 5 C 0.20 2.42 7.77 -13.06 -0.10 2.32 16 6 C -0.03 -0.30 5.84 -27.88 -0.16 -0.46 16 7 C -0.11 -1.47 5.12 -26.73 -0.14 -1.61 16 8 C 0.06 0.93 4.96 -3.83 -0.02 0.91 16 9 N -0.54 -11.37 4.75 -244.38 -1.16 -12.53 16 10 C 0.04 0.67 9.14 60.07 0.55 1.22 16 11 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 12 C -0.51 -14.15 8.46 -34.44 -0.29 -14.44 16 13 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 N -0.49 -6.46 11.55 -9.87 -0.11 -6.58 16 21 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 29 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.05 0.76 6.47 -51.93 -0.34 0.42 16 31 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -31.69 298.42 -6.83 -38.52 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -5.16 Total: -5.78 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.19 Total: -5.09 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.16 Total: -49.85 kcal Atomic # 8 Polarization: 0.99 SS G_CDS: 0.20 Total: 1.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.69 -6.83 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268623399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.320 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds