Wall clock time and date at job start Sun Mar 29 2020 22:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00106 * 293.95323 * 9 8 7 11 11 C 1.46904 * 111.00369 * 169.99373 * 9 8 7 12 12 C 1.50695 * 109.47201 * 189.99999 * 11 9 8 13 13 H 1.08000 * 120.00239 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99708 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00377 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00151 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46902 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99761 * 16 14 12 19 19 H 1.48503 * 109.46910 * 240.00163 * 16 14 12 20 20 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 21 21 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 22 22 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 23 23 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 24 24 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 25 25 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 26 26 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 27 27 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 28 28 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 29 29 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 30 30 H 1.08997 * 109.47009 * 59.99557 * 10 9 8 31 31 H 1.08998 * 109.46627 * 180.02562 * 10 9 8 32 32 H 1.09001 * 109.46779 * 299.99824 * 10 9 8 33 33 H 1.08997 * 109.47094 * 310.00434 * 11 9 8 34 34 H 1.09004 * 109.46297 * 70.00073 * 11 9 8 35 35 H 0.97000 * 120.00294 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 7 6.9225 -2.8087 -2.8276 10 6 5.9495 -3.6734 -3.5085 11 6 8.2694 -3.3933 -2.8739 12 6 8.7544 -3.4250 -4.3003 13 1 8.1253 -3.0482 -5.0932 14 6 10.0015 -3.9351 -4.5932 15 7 10.7678 -4.3936 -3.6277 16 14 10.6031 -3.9738 -6.3613 17 1 9.5605 -3.4032 -7.2515 18 1 11.8475 -3.1720 -6.4784 19 1 10.8793 -5.3775 -6.7595 20 7 2.3030 -1.0840 -0.0002 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8897 0.5142 24 1 5.5843 -0.8849 0.5130 25 1 4.6208 -2.3815 0.5141 26 1 4.4380 -2.2655 -1.9560 27 1 5.4015 -0.7690 -1.9571 28 1 7.2990 -1.9909 -0.9292 29 1 6.3349 -3.4871 -0.9284 30 1 4.9753 -3.1847 -3.5209 31 1 6.2785 -3.8549 -4.5317 32 1 5.8732 -4.6225 -2.9780 33 1 8.9486 -2.7892 -2.2725 34 1 8.2386 -4.4084 -2.4780 35 1 11.6453 -4.7521 -3.8338 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268623399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:21 Heat of formation + Delta-G solvation = 36.100163 kcal Electronic energy + Delta-G solvation = -16408.087337 eV Core-core repulsion = 13636.317067 eV Total energy + Delta-G solvation = -2771.770270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.61160 -38.72260 -37.13847 -35.88962 -34.59122 -32.77722 -30.14275 -29.35137 -28.18163 -26.34258 -24.61587 -23.43190 -22.08663 -21.57741 -19.14100 -18.50420 -18.37775 -16.80937 -16.62971 -16.27969 -15.60901 -15.27870 -15.03200 -14.64933 -14.47247 -13.94900 -13.70212 -13.63903 -13.41583 -13.12498 -12.85343 -12.75933 -12.54558 -12.46723 -12.21804 -12.20014 -12.09370 -11.91882 -11.44379 -11.23578 -10.86078 -10.60140 -8.98005 -8.18903 -6.28324 0.10135 1.17929 1.42195 1.43128 1.56390 1.81571 2.42022 2.68849 3.07872 3.13857 3.36951 3.87337 4.00797 4.17637 4.32446 4.47494 4.52647 4.57092 4.60505 4.66208 4.74463 4.79786 4.85203 4.91689 5.08120 5.10201 5.17193 5.21940 5.30150 5.38829 5.67934 6.08489 6.35352 6.68876 6.88435 7.13179 7.41418 8.92222 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.003651 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.367111 B = 7667.353591 C = 7778.145268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.161 3.839 3 N -0.414 5.414 4 O 0.064 5.936 5 C 0.201 3.799 6 C -0.021 4.021 7 C -0.098 4.098 8 C 0.056 3.944 9 N -0.554 5.554 10 C 0.039 3.961 11 C 0.206 3.794 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.279 1.279 20 N -0.507 5.507 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.009 0.991 34 H -0.036 1.036 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 6.459 8.166 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.127 5.127 4 O 0.010 5.990 5 C -0.019 4.019 6 C -0.060 4.060 7 C -0.137 4.137 8 C -0.072 4.072 9 N -0.278 5.278 10 C -0.109 4.109 11 C 0.080 3.920 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.205 1.205 20 N -0.242 5.242 21 H 0.119 0.881 22 H 0.122 0.878 23 H 0.117 0.883 24 H 0.146 0.854 25 H 0.143 0.857 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.027 0.973 34 H -0.018 1.018 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.497 7.343 7.955 20.576 hybrid contribution 0.865 -1.004 -0.356 1.372 sum -16.633 6.339 7.599 19.354 Atomic orbital electron populations 1.20345 0.80403 1.05802 1.05462 1.26679 1.02205 0.83101 0.99146 1.74622 0.89778 1.24867 1.23394 1.85265 1.22292 1.25401 1.66083 1.29273 0.97504 0.81841 0.93311 1.20385 0.87446 0.98860 0.99337 1.21423 0.96703 1.00988 0.94560 1.22077 0.97100 0.98539 0.89489 1.61985 1.03079 1.47288 1.15455 1.22235 0.95526 0.94050 0.99113 1.19402 0.85379 0.90937 0.96314 1.21532 1.01218 1.39620 0.93857 0.92040 1.25887 0.96892 0.94966 1.01906 1.70079 1.10762 1.42685 1.33945 0.85361 0.78256 0.77768 0.79389 1.18860 1.20397 1.20464 1.71951 1.00375 1.29947 1.21918 0.88092 0.87832 0.88267 0.85383 0.85678 0.91561 0.91084 0.90723 0.94836 0.90442 0.92816 0.96927 0.97331 1.01817 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.51 71.24 0.75 -0.10 16 2 C 0.16 3.72 8.22 138.46 1.14 4.86 16 3 N -0.41 -10.83 12.16 -60.32 -0.73 -11.56 16 4 O 0.06 1.62 11.31 74.85 0.85 2.46 16 5 C 0.20 4.58 7.77 88.38 0.69 5.26 16 6 C -0.02 -0.38 5.84 29.85 0.17 -0.21 16 7 C -0.10 -2.37 5.12 30.59 0.16 -2.21 16 8 C 0.06 1.76 4.96 86.30 0.43 2.19 16 9 N -0.55 -23.10 4.75 -927.07 -4.41 -27.51 16 10 C 0.04 1.47 9.14 127.69 1.17 2.64 16 11 C 0.21 10.79 4.72 85.55 0.40 11.19 16 12 C -0.52 -29.57 8.46 25.60 0.22 -29.36 16 13 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 16 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 N -0.51 -12.60 11.55 -303.19 -3.50 -16.10 16 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.67 6.55 -2.39 -0.02 1.65 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 29 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 30 H 0.08 2.41 6.47 -2.39 -0.02 2.39 16 31 H 0.05 2.22 6.76 -2.39 -0.02 2.20 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.01 0.48 7.93 -2.39 -0.02 0.46 16 34 H -0.04 -2.03 8.12 -2.38 -0.02 -2.05 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -68.16 298.42 1.17 -66.99 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.07 Total: 0.25 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.58 Total: -5.19 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -8.36 Total: -110.67 kcal Atomic # 8 Polarization: 1.62 SS G_CDS: 0.85 Total: 2.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.16 1.17 -66.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268623399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.092 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds