Wall clock time and date at job start Sun Mar 29 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 C 1.36925 * 120.00204 * 82.77859 * 3 2 1 5 5 H 1.07998 * 120.00776 * 170.69799 * 4 3 2 6 6 C 1.38988 * 119.99982 * 350.70085 * 4 3 2 7 7 N 1.31415 * 119.99496 * 2.06462 * 6 4 3 8 8 Si 1.86794 * 120.00133 * 182.06572 * 6 4 3 9 9 H 1.48493 * 109.47282 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46936 * 120.00175 * 8 6 4 11 11 H 1.48503 * 109.47187 * 239.99743 * 8 6 4 12 12 C 1.34779 * 120.00154 * 262.77740 * 3 2 1 13 13 O 1.21773 * 119.99764 * 354.78043 * 12 3 2 14 14 C 1.41679 * 120.00069 * 175.05393 * 12 3 2 15 15 C 1.33567 * 118.78884 * 82.80236 * 14 12 3 16 16 C 1.50695 * 118.47215 * 0.40719 * 15 14 12 17 17 O 1.34371 * 123.05952 * 180.15092 * 15 14 12 18 18 C 1.45355 * 117.53546 * 344.17930 * 17 15 14 19 19 C 1.53483 * 108.27194 * 47.26016 * 18 17 15 20 20 C 1.50411 * 118.79620 * 263.06588 * 14 12 3 21 21 H 1.09003 * 109.47032 * 187.65095 * 1 2 3 22 22 H 1.08996 * 109.47364 * 307.65719 * 1 2 3 23 23 H 1.09002 * 109.46813 * 67.65206 * 1 2 3 24 24 H 1.09001 * 109.46747 * 240.00259 * 2 1 3 25 25 H 1.09001 * 109.47081 * 120.00026 * 2 1 3 26 26 H 0.97004 * 119.99620 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47216 * 93.42160 * 16 15 14 28 28 H 1.08999 * 109.47126 * 213.41815 * 16 15 14 29 29 H 1.09006 * 109.47039 * 333.41735 * 16 15 14 30 30 H 1.08993 * 109.70428 * 287.56265 * 18 17 15 31 31 H 1.09004 * 109.73524 * 166.96735 * 18 17 15 32 32 H 1.08997 * 109.70603 * 177.57267 * 19 18 17 33 33 H 1.08998 * 109.74026 * 56.96804 * 19 18 17 34 34 H 1.08997 * 109.45993 * 282.33838 * 20 14 12 35 35 H 1.09010 * 109.45231 * 42.27478 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1060 2.0764 1.1764 5 1 2.6031 3.0349 1.2016 6 6 1.5553 1.5486 2.3382 7 7 0.9863 0.3642 2.3164 8 14 1.6240 2.5226 3.9306 9 1 2.3131 3.8159 3.6905 10 1 0.2434 2.7789 4.4141 11 1 2.3706 1.7470 4.9535 12 6 2.3813 1.9677 -1.1579 13 8 2.3941 1.3214 -2.1899 14 6 2.7536 3.3346 -1.1735 15 6 4.0044 3.6645 -0.8408 16 6 4.9643 2.5626 -0.4731 17 8 4.4481 4.9327 -0.8237 18 6 3.6481 5.9338 -1.5096 19 6 2.1828 5.7473 -1.0928 20 6 1.7241 4.3615 -1.5581 21 1 -0.3633 -1.0186 0.1368 22 1 -0.3634 0.6278 0.8135 23 1 -0.3633 0.3908 -0.9505 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.6022 -0.0044 3.1273 27 1 5.5228 2.2569 -1.3578 28 1 5.6572 2.9230 0.2873 29 1 4.4073 1.7108 -0.0826 30 1 3.7429 5.8044 -2.5877 31 1 3.9861 6.9312 -1.2281 32 1 1.5669 6.5148 -1.5613 33 1 2.0967 5.8179 -0.0085 34 1 1.6012 4.3645 -2.6412 35 1 0.7727 4.1164 -1.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270030480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:12 Heat of formation + Delta-G solvation = -43.355143 kcal Electronic energy + Delta-G solvation = -18354.648898 eV Core-core repulsion = 15547.140436 eV Total energy + Delta-G solvation = -2807.508462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97643 -38.18705 -35.04980 -33.46890 -32.58249 -31.30186 -29.44113 -27.58967 -25.20051 -24.57006 -22.57435 -21.77592 -19.65736 -18.42852 -17.11006 -16.18731 -15.56144 -15.31912 -14.49271 -14.20862 -13.99122 -13.59088 -13.07237 -12.84870 -12.63399 -12.47680 -12.21705 -11.92633 -11.57938 -11.44290 -11.34601 -11.04667 -10.74588 -10.59542 -10.49052 -10.39321 -10.08563 -10.01320 -9.82513 -8.80006 -8.38753 -7.70224 -7.40232 -6.17663 -3.83139 2.65671 3.10052 3.21673 3.25425 3.67934 3.89912 4.11418 4.94597 5.08229 5.10397 5.24702 5.33025 5.59668 5.64631 5.79690 5.97035 6.03491 6.12989 6.27783 6.38390 6.46601 6.59588 6.71963 6.80796 6.89833 6.99375 7.06335 7.22240 7.40775 7.61775 7.83370 7.92691 8.02521 8.55920 9.12906 9.61618 10.01708 10.67890 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.011130 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.766588 B = 2515.155511 C = 3114.746615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.127 3.873 3 N -0.437 5.437 4 C -0.311 4.311 5 H 0.100 0.900 6 C 0.027 3.973 7 N -0.870 5.870 8 Si 0.922 3.078 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.504 3.496 13 O -0.616 6.616 14 C -0.232 4.232 15 C 0.097 3.903 16 C -0.106 4.106 17 O -0.321 6.321 18 C 0.061 3.939 19 C -0.155 4.155 20 C -0.057 4.057 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.011 0.989 24 H 0.035 0.965 25 H 0.110 0.890 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 7.651 -1.710 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.005 3.995 3 N -0.154 5.154 4 C -0.439 4.439 5 H 0.118 0.882 6 C -0.176 4.176 7 N -0.511 5.511 8 Si 0.749 3.251 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.293 3.707 13 O -0.504 6.504 14 C -0.236 4.236 15 C 0.050 3.950 16 C -0.163 4.163 17 O -0.235 6.235 18 C -0.013 4.013 19 C -0.193 4.193 20 C -0.094 4.094 21 H 0.053 0.947 22 H 0.100 0.900 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.673 7.257 -1.929 7.971 hybrid contribution -0.432 0.523 0.827 1.069 sum 2.241 7.780 -1.103 8.171 Atomic orbital electron populations 1.21993 0.97074 1.00145 0.99243 1.21484 0.94233 0.83112 1.00706 1.43974 1.54071 1.11900 1.05451 1.19801 1.34965 1.03924 0.85196 0.88206 1.25255 0.96264 0.96456 0.99576 1.70272 1.37330 1.15670 1.27802 0.85916 0.77975 0.79629 0.81561 1.19408 1.20771 1.20747 1.16380 0.83759 0.86773 0.83743 1.90653 1.61044 1.65764 1.32974 1.19721 0.94628 0.96440 1.12811 1.20760 0.93367 0.83771 0.97052 1.20858 0.98274 0.95642 1.01535 1.86080 1.50253 1.15428 1.71763 1.23302 0.91014 0.90704 0.96325 1.22173 0.96185 0.98163 1.02747 1.20058 0.97743 0.91269 1.00374 0.94747 0.90035 0.97041 0.94645 0.87266 0.92558 0.91259 0.91283 0.88467 0.91883 0.88370 0.90467 0.90397 0.91566 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.26 37.16 0.34 -2.68 16 2 C 0.13 3.22 5.53 -4.04 -0.02 3.20 16 3 N -0.44 -11.20 2.20 -118.02 -0.26 -11.46 16 4 C -0.31 -7.83 8.44 -15.00 -0.13 -7.96 16 5 H 0.10 2.49 6.12 -52.49 -0.32 2.17 16 6 C 0.03 0.65 5.17 -17.45 -0.09 0.56 16 7 N -0.87 -21.80 7.30 55.50 0.40 -21.40 16 8 Si 0.92 19.56 29.55 -169.99 -5.02 14.53 16 9 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.50 12.79 4.96 -14.95 -0.07 12.71 16 13 O -0.62 -17.37 16.54 5.12 0.08 -17.28 16 14 C -0.23 -5.07 3.92 -105.09 -0.41 -5.48 16 15 C 0.10 1.96 5.84 -35.95 -0.21 1.75 16 16 C -0.11 -2.04 9.59 36.00 0.35 -1.70 16 17 O -0.32 -5.75 10.40 -14.95 -0.16 -5.90 16 18 C 0.06 0.85 7.15 37.41 0.27 1.12 16 19 C -0.16 -2.25 6.23 -26.37 -0.16 -2.42 16 20 C -0.06 -1.05 5.89 -27.92 -0.16 -1.21 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.08 2.08 6.07 -51.93 -0.31 1.76 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.91 7.16 -51.93 -0.37 0.54 16 25 H 0.11 2.85 5.94 -51.93 -0.31 2.54 16 26 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.10 2.12 5.58 -51.93 -0.29 1.83 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -29.24 279.90 -6.01 -35.24 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.97 Total: 4.15 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.31 Total: -2.10 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.15 Total: -32.85 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.07 Total: -23.19 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.24 -6.01 -35.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270030480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.113 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds