Wall clock time and date at job start Sun Mar 29 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 C 1.36925 * 120.00204 * 82.77859 * 3 2 1 5 5 H 1.07998 * 120.00776 * 170.69799 * 4 3 2 6 6 C 1.38988 * 119.99982 * 350.70085 * 4 3 2 7 7 N 1.31415 * 119.99496 * 2.06462 * 6 4 3 8 8 Si 1.86794 * 120.00133 * 182.06572 * 6 4 3 9 9 H 1.48493 * 109.47282 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46936 * 120.00175 * 8 6 4 11 11 H 1.48503 * 109.47187 * 239.99743 * 8 6 4 12 12 C 1.34779 * 120.00154 * 262.77740 * 3 2 1 13 13 O 1.21773 * 119.99764 * 354.78043 * 12 3 2 14 14 C 1.41679 * 120.00069 * 175.05393 * 12 3 2 15 15 C 1.33567 * 118.78884 * 82.80236 * 14 12 3 16 16 C 1.50695 * 118.47215 * 0.40719 * 15 14 12 17 17 O 1.34371 * 123.05952 * 180.15092 * 15 14 12 18 18 C 1.45355 * 117.53546 * 344.17930 * 17 15 14 19 19 C 1.53483 * 108.27194 * 47.26016 * 18 17 15 20 20 C 1.50411 * 118.79620 * 263.06588 * 14 12 3 21 21 H 1.09003 * 109.47032 * 187.65095 * 1 2 3 22 22 H 1.08996 * 109.47364 * 307.65719 * 1 2 3 23 23 H 1.09002 * 109.46813 * 67.65206 * 1 2 3 24 24 H 1.09001 * 109.46747 * 240.00259 * 2 1 3 25 25 H 1.09001 * 109.47081 * 120.00026 * 2 1 3 26 26 H 0.97004 * 119.99620 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47216 * 93.42160 * 16 15 14 28 28 H 1.08999 * 109.47126 * 213.41815 * 16 15 14 29 29 H 1.09006 * 109.47039 * 333.41735 * 16 15 14 30 30 H 1.08993 * 109.70428 * 287.56265 * 18 17 15 31 31 H 1.09004 * 109.73524 * 166.96735 * 18 17 15 32 32 H 1.08997 * 109.70603 * 177.57267 * 19 18 17 33 33 H 1.08998 * 109.74026 * 56.96804 * 19 18 17 34 34 H 1.08997 * 109.45993 * 282.33838 * 20 14 12 35 35 H 1.09010 * 109.45231 * 42.27478 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1060 2.0764 1.1764 5 1 2.6031 3.0349 1.2016 6 6 1.5553 1.5486 2.3382 7 7 0.9863 0.3642 2.3164 8 14 1.6240 2.5226 3.9306 9 1 2.3131 3.8159 3.6905 10 1 0.2434 2.7789 4.4141 11 1 2.3706 1.7470 4.9535 12 6 2.3813 1.9677 -1.1579 13 8 2.3941 1.3214 -2.1899 14 6 2.7536 3.3346 -1.1735 15 6 4.0044 3.6645 -0.8408 16 6 4.9643 2.5626 -0.4731 17 8 4.4481 4.9327 -0.8237 18 6 3.6481 5.9338 -1.5096 19 6 2.1828 5.7473 -1.0928 20 6 1.7241 4.3615 -1.5581 21 1 -0.3633 -1.0186 0.1368 22 1 -0.3634 0.6278 0.8135 23 1 -0.3633 0.3908 -0.9505 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.6022 -0.0044 3.1273 27 1 5.5228 2.2569 -1.3578 28 1 5.6572 2.9230 0.2873 29 1 4.4073 1.7108 -0.0826 30 1 3.7429 5.8044 -2.5877 31 1 3.9861 6.9312 -1.2281 32 1 1.5669 6.5148 -1.5613 33 1 2.0967 5.8179 -0.0085 34 1 1.6012 4.3645 -2.6412 35 1 0.7727 4.1164 -1.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270030480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:12 Heat of formation + Delta-G solvation = -60.466463 kcal Electronic energy + Delta-G solvation = -18355.390900 eV Core-core repulsion = 15547.140436 eV Total energy + Delta-G solvation = -2808.250464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.57637 -39.91928 -37.03065 -34.91673 -34.10177 -33.24615 -31.37352 -29.01634 -26.89382 -26.26750 -24.25860 -23.37289 -21.45352 -20.11740 -18.66565 -18.13946 -17.03733 -16.80820 -16.18997 -16.07093 -15.62533 -15.14140 -14.71506 -14.50396 -14.29046 -14.08753 -13.79358 -13.52499 -13.26257 -13.17339 -12.99354 -12.78985 -12.56254 -12.24052 -12.13333 -11.93556 -11.78561 -11.66521 -11.40039 -10.78494 -10.35011 -9.69643 -8.97984 -8.09295 -5.80783 1.07369 1.40628 1.48760 1.60157 1.97759 2.31231 2.39751 3.16012 3.28753 3.85700 3.89496 4.04501 4.31062 4.44692 4.47312 4.54493 4.62807 4.67715 4.76503 4.79490 4.90286 4.95587 4.99054 5.04822 5.16448 5.22309 5.39474 5.44973 5.51478 5.62441 5.82868 5.91976 6.55682 6.59241 7.17669 7.65269 8.06260 8.77362 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.011130 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.766588 B = 2515.155511 C = 3114.746615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.128 3.872 3 N -0.443 5.443 4 C -0.326 4.326 5 H 0.101 0.899 6 C -0.010 4.010 7 N -0.886 5.886 8 Si 0.988 3.012 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.498 3.502 13 O -0.657 6.657 14 C -0.270 4.270 15 C 0.115 3.885 16 C -0.109 4.109 17 O -0.325 6.325 18 C 0.054 3.946 19 C -0.145 4.145 20 C -0.057 4.057 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.003 0.997 24 H 0.022 0.978 25 H 0.102 0.898 26 H 0.267 0.733 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 9.893 -0.883 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.005 3.995 3 N -0.159 5.159 4 C -0.453 4.453 5 H 0.119 0.881 6 C -0.210 4.210 7 N -0.527 5.527 8 Si 0.812 3.188 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.289 3.711 13 O -0.548 6.548 14 C -0.274 4.274 15 C 0.067 3.933 16 C -0.165 4.165 17 O -0.238 6.238 18 C -0.019 4.019 19 C -0.183 4.183 20 C -0.095 4.095 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.022 0.978 24 H 0.041 0.959 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.169 9.510 -1.095 10.084 hybrid contribution -0.562 -0.201 0.564 0.821 sum 2.607 9.308 -0.531 9.681 Atomic orbital electron populations 1.21820 0.95999 1.00959 0.98122 1.21434 0.95066 0.83450 0.99524 1.44150 1.53818 1.11862 1.06044 1.19932 1.35937 1.04159 0.85309 0.88142 1.26021 0.95563 0.97280 1.02146 1.70345 1.37120 1.16492 1.28719 0.84925 0.77850 0.78434 0.77562 1.18817 1.20588 1.20452 1.16918 0.83097 0.88098 0.82949 1.90600 1.62890 1.67124 1.34228 1.19750 0.96470 0.95244 1.15922 1.20784 0.92688 0.85035 0.94773 1.20847 0.98308 0.94678 1.02678 1.86072 1.51081 1.14727 1.71955 1.23743 0.90119 0.91193 0.96874 1.22156 0.97284 0.96420 1.02404 1.20087 0.96058 0.92916 1.00394 0.92812 0.91416 0.97753 0.95949 0.88057 0.92227 0.90072 0.88943 0.91551 0.90743 0.84215 0.86669 0.91255 0.91330 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 9.26 71.98 0.67 -4.73 16 2 C 0.13 6.68 5.53 86.38 0.48 7.15 16 3 N -0.44 -23.29 2.20 -645.49 -1.42 -24.71 16 4 C -0.33 -16.53 8.44 84.08 0.71 -15.82 16 5 H 0.10 5.01 6.12 -2.91 -0.02 4.99 16 6 C -0.01 -0.48 5.17 84.94 0.44 -0.04 16 7 N -0.89 -44.37 7.30 21.67 0.16 -44.22 16 8 Si 0.99 39.33 29.55 68.60 2.03 41.36 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 10 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 12 C 0.50 26.00 4.96 85.09 0.42 26.42 16 13 O -0.66 -38.42 16.54 -4.58 -0.08 -38.50 16 14 C -0.27 -11.82 3.92 -20.16 -0.08 -11.90 16 15 C 0.11 4.53 5.84 24.62 0.14 4.67 16 16 C -0.11 -4.11 9.59 71.23 0.68 -3.43 16 17 O -0.32 -10.73 10.40 -76.39 -0.79 -11.52 16 18 C 0.05 1.30 7.15 72.14 0.52 1.81 16 19 C -0.15 -3.79 6.23 30.83 0.19 -3.60 16 20 C -0.06 -2.06 5.89 29.83 0.18 -1.89 16 21 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 23 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 24 H 0.02 1.19 7.16 -2.39 -0.02 1.18 16 25 H 0.10 5.42 5.94 -2.39 -0.01 5.41 16 26 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.07 2.95 5.58 -2.38 -0.01 2.93 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.14 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -63.69 279.90 5.32 -58.37 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.08 Total: 20.56 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 4.35 Total: -1.34 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.26 Total: -68.92 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.87 Total: -50.02 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -63.69 5.32 -58.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270030480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.100 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds