Wall clock time and date at job start Sun Mar 29 2020 22:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.34512 * 125.78762 * 89.99768 * 4 3 2 6 6 C 1.41385 * 106.83926 * 179.76997 * 5 4 3 7 7 C 1.34515 * 106.83992 * 0.23220 * 6 5 4 8 8 C 1.50704 * 125.79063 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46973 * 90.00036 * 8 7 6 10 10 C 1.46895 * 110.99703 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46943 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47082 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99963 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00061 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47410 * 90.00004 * 16 14 12 18 18 H 1.48509 * 109.47246 * 210.00075 * 16 14 12 19 19 H 1.48495 * 109.47538 * 330.00060 * 16 14 12 20 20 O 1.34305 * 125.78789 * 270.15980 * 4 3 2 21 21 H 1.08998 * 109.47556 * 59.99623 * 1 2 3 22 22 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46493 * 299.99440 * 1 2 3 24 24 H 1.08999 * 109.46828 * 60.00109 * 3 2 1 25 25 H 1.09008 * 109.46940 * 300.00413 * 3 2 1 26 26 H 1.08002 * 126.58498 * 0.04167 * 5 4 3 27 27 H 1.08002 * 126.58069 * 180.26215 * 6 5 4 28 28 H 1.08996 * 109.46985 * 209.99865 * 8 7 6 29 29 H 1.09000 * 109.47266 * 329.99985 * 8 7 6 30 30 H 1.00891 * 111.00350 * 56.04241 * 9 8 7 31 31 H 1.09009 * 109.47048 * 299.99187 * 10 9 8 32 32 H 1.08995 * 109.47934 * 59.99606 * 10 9 8 33 33 H 1.09002 * 109.46966 * 299.99304 * 11 10 9 34 34 H 1.08997 * 109.47143 * 59.99709 * 11 10 9 35 35 H 0.97005 * 120.00148 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2963 1.1245 -1.0921 6 6 5.6299 1.0243 -0.6336 7 6 5.5810 1.0258 0.7107 8 6 6.7672 0.9364 1.6359 9 7 7.2550 2.2885 1.9387 10 6 8.4141 2.2404 2.8398 11 6 8.8932 3.6641 3.1310 12 6 10.0819 3.6148 4.0559 13 1 10.4584 2.6632 4.4012 14 6 10.6895 4.7844 4.4605 15 7 10.2320 5.9431 4.0389 16 14 12.1634 4.7233 5.6065 17 1 13.4109 4.6444 4.8047 18 1 12.1903 5.9491 6.4444 19 1 12.0610 3.5279 6.4814 20 8 4.2957 1.1212 1.0885 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.6886 1.8463 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.9698 1.1511 -2.1213 27 1 6.5177 0.9595 -1.2452 28 1 6.4702 0.4417 2.5606 29 1 7.5602 0.3631 1.1557 30 1 6.5192 2.8602 2.3257 31 1 8.1289 1.7547 3.7731 32 1 9.2184 1.6763 2.3676 33 1 9.1785 4.1494 2.1976 34 1 8.0891 4.2286 3.6031 35 1 10.6593 6.7660 4.3239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273093292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:09 Heat of formation + Delta-G solvation = -37.479392 kcal Electronic energy + Delta-G solvation = -16035.269283 eV Core-core repulsion = 13228.015613 eV Total energy + Delta-G solvation = -2807.253670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.52832 -38.12295 -36.12796 -33.19541 -32.93616 -31.47811 -29.59223 -27.44900 -26.09905 -24.27908 -22.89317 -21.73292 -20.64861 -20.07340 -17.10951 -16.90727 -16.33497 -16.05969 -15.68131 -15.39353 -15.07216 -14.42117 -13.85741 -13.77594 -13.10696 -12.97057 -12.73546 -12.34102 -12.18874 -12.05035 -11.79674 -11.67162 -11.08112 -10.92318 -10.55982 -10.09553 -10.02857 -9.82482 -9.45700 -9.17948 -8.40271 -8.34926 -7.90628 -6.00001 -4.02931 1.60848 2.58033 2.84262 3.32451 3.38473 3.41631 3.75341 4.43522 4.55977 4.74922 4.87746 4.95156 4.99408 5.01590 5.09650 5.13206 5.31916 5.35986 5.51521 5.66342 5.83692 6.05404 6.11924 6.27281 6.33876 6.57177 6.72700 6.93033 7.23327 7.36916 7.69541 7.76255 7.89401 8.06154 8.41672 9.04234 9.60921 11.11445 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057695 B = 0.003290 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.197604 B = 8508.232524 C = 8617.191247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.146 3.854 4 C -0.031 4.031 5 C -0.180 4.180 6 C -0.198 4.198 7 C 0.011 3.989 8 C 0.136 3.864 9 N -0.687 5.687 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.171 6.171 21 H 0.044 0.956 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.341 0.659 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 -10.424 -9.198 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.070 3.930 4 C -0.081 4.081 5 C -0.199 4.199 6 C -0.218 4.218 7 C -0.040 4.040 8 C 0.007 3.993 9 N -0.319 5.319 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.068 6.068 21 H 0.062 0.938 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.158 0.842 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.711 -10.356 -9.438 21.808 hybrid contribution 0.239 0.087 1.225 1.251 sum -16.472 -10.269 -8.213 21.077 Atomic orbital electron populations 1.22782 0.80421 1.03116 1.00228 1.87992 1.19984 1.27191 1.95486 1.20627 0.84774 0.85448 1.02168 1.21735 0.92310 1.09437 0.84626 1.21595 0.92951 1.06275 0.99115 1.21568 0.97914 1.08384 0.93937 1.22581 0.82553 1.03819 0.95004 1.20421 0.89944 0.93294 0.95639 1.60686 1.10844 1.09562 1.50768 1.22224 0.90412 1.01899 0.91728 1.19074 0.95781 0.89309 0.97074 1.21165 1.13820 0.92550 1.28590 0.92673 1.25008 0.97406 0.95509 0.96470 1.69975 1.41032 0.97357 1.44853 0.86571 0.83019 0.77456 0.80800 1.20604 1.21220 1.19913 1.83947 1.16912 1.70958 1.34934 0.93774 0.89328 0.93751 0.91445 0.90032 0.83499 0.83138 0.93921 0.88098 0.84182 0.96259 0.91944 0.95521 0.96729 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.28 10.69 -35.23 -0.38 -4.66 16 3 C 0.15 1.48 6.47 36.01 0.23 1.71 16 4 C -0.03 -0.42 6.95 -35.62 -0.25 -0.67 16 5 C -0.18 -2.33 10.81 -39.70 -0.43 -2.76 16 6 C -0.20 -2.80 10.81 -39.70 -0.43 -3.23 16 7 C 0.01 0.17 6.83 -35.62 -0.24 -0.07 16 8 C 0.14 2.08 6.22 -4.97 -0.03 2.05 16 9 N -0.69 -12.63 6.49 -115.05 -0.75 -13.38 16 10 C 0.06 1.36 5.62 -3.82 -0.02 1.34 16 11 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 16 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 O -0.17 -2.68 10.65 5.70 0.06 -2.62 16 21 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.34 6.26 8.72 -39.30 -0.34 5.92 16 31 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -32.19 306.94 -6.71 -38.90 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.38 Total: 0.20 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.61 Total: -13.42 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.01 Total: -39.73 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.32 Total: -7.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.19 -6.71 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273093292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.421 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds