Wall clock time and date at job start Sun Mar 29 2020 22:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 C 1.50702 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.34512 * 125.78762 * 89.99768 * 4 3 2 6 6 C 1.41385 * 106.83926 * 179.76997 * 5 4 3 7 7 C 1.34515 * 106.83992 * 0.23220 * 6 5 4 8 8 C 1.50704 * 125.79063 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46973 * 90.00036 * 8 7 6 10 10 C 1.46895 * 110.99703 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46943 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47082 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99963 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00061 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47410 * 90.00004 * 16 14 12 18 18 H 1.48509 * 109.47246 * 210.00075 * 16 14 12 19 19 H 1.48495 * 109.47538 * 330.00060 * 16 14 12 20 20 O 1.34305 * 125.78789 * 270.15980 * 4 3 2 21 21 H 1.08998 * 109.47556 * 59.99623 * 1 2 3 22 22 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46493 * 299.99440 * 1 2 3 24 24 H 1.08999 * 109.46828 * 60.00109 * 3 2 1 25 25 H 1.09008 * 109.46940 * 300.00413 * 3 2 1 26 26 H 1.08002 * 126.58498 * 0.04167 * 5 4 3 27 27 H 1.08002 * 126.58069 * 180.26215 * 6 5 4 28 28 H 1.08996 * 109.46985 * 209.99865 * 8 7 6 29 29 H 1.09000 * 109.47266 * 329.99985 * 8 7 6 30 30 H 1.00891 * 111.00350 * 56.04241 * 9 8 7 31 31 H 1.09009 * 109.47048 * 299.99187 * 10 9 8 32 32 H 1.08995 * 109.47934 * 59.99606 * 10 9 8 33 33 H 1.09002 * 109.46966 * 299.99304 * 11 10 9 34 34 H 1.08997 * 109.47143 * 59.99709 * 11 10 9 35 35 H 0.97005 * 120.00148 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2963 1.1245 -1.0921 6 6 5.6299 1.0243 -0.6336 7 6 5.5810 1.0258 0.7107 8 6 6.7672 0.9364 1.6359 9 7 7.2550 2.2885 1.9387 10 6 8.4141 2.2404 2.8398 11 6 8.8932 3.6641 3.1310 12 6 10.0819 3.6148 4.0559 13 1 10.4584 2.6632 4.4012 14 6 10.6895 4.7844 4.4605 15 7 10.2320 5.9431 4.0389 16 14 12.1634 4.7233 5.6065 17 1 13.4109 4.6444 4.8047 18 1 12.1903 5.9491 6.4444 19 1 12.0610 3.5279 6.4814 20 8 4.2957 1.1212 1.0885 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.6886 1.8463 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.9698 1.1511 -2.1213 27 1 6.5177 0.9595 -1.2452 28 1 6.4702 0.4417 2.5606 29 1 7.5602 0.3631 1.1557 30 1 6.5192 2.8602 2.3257 31 1 8.1289 1.7547 3.7731 32 1 9.2184 1.6763 2.3676 33 1 9.1785 4.1494 2.1976 34 1 8.0891 4.2286 3.6031 35 1 10.6593 6.7660 4.3239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273093292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:09 Heat of formation + Delta-G solvation = -59.939509 kcal Electronic energy + Delta-G solvation = -16036.243227 eV Core-core repulsion = 13228.015613 eV Total energy + Delta-G solvation = -2808.227614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.59595 -38.84630 -37.66962 -35.15976 -34.05864 -32.83609 -31.08674 -28.61374 -27.03534 -25.83567 -24.24203 -22.81668 -22.47351 -21.17134 -18.53774 -18.06636 -17.74153 -16.96781 -16.71151 -16.61145 -16.44156 -16.10775 -15.32072 -14.79951 -14.61575 -14.14871 -13.91260 -13.74433 -13.48911 -13.25197 -12.97901 -12.82976 -12.74085 -12.42637 -12.35868 -11.94924 -11.45591 -11.31573 -10.87052 -10.75442 -10.56745 -9.55983 -9.31808 -8.20312 -6.32107 0.55864 1.41337 1.43099 1.53591 1.55055 1.84355 2.41150 3.00519 3.13343 3.39943 3.67154 3.88334 4.08697 4.13820 4.24242 4.39718 4.45810 4.52792 4.56798 4.57767 4.62019 4.81305 4.86702 5.03962 5.05546 5.07854 5.43015 5.56145 5.64700 5.75456 6.05275 6.09057 6.13732 6.21374 6.37919 6.85242 7.37374 8.92033 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057695 B = 0.003290 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.197604 B = 8508.232524 C = 8617.191247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.145 3.855 4 C -0.041 4.041 5 C -0.186 4.186 6 C -0.199 4.199 7 C -0.015 4.015 8 C 0.141 3.859 9 N -0.693 5.693 10 C 0.083 3.917 11 C 0.031 3.969 12 C -0.544 4.544 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.262 1.262 20 O -0.192 6.192 21 H 0.062 0.938 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.174 0.826 27 H 0.163 0.837 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.338 0.662 31 H 0.025 0.975 32 H 0.070 0.930 33 H -0.005 1.005 34 H -0.011 1.011 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.420 -11.430 -9.460 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.069 3.931 4 C -0.090 4.090 5 C -0.205 4.205 6 C -0.219 4.219 7 C -0.066 4.066 8 C 0.013 3.987 9 N -0.324 5.324 10 C -0.045 4.045 11 C -0.007 4.007 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.186 1.186 20 O -0.089 6.089 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.129 0.871 26 H 0.192 0.808 27 H 0.181 0.819 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.008 0.992 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.007 -11.384 -9.711 22.653 hybrid contribution 0.208 0.394 1.236 1.314 sum -16.799 -10.990 -8.474 21.790 Atomic orbital electron populations 1.23001 0.78348 1.04214 1.01527 1.87935 1.22273 1.27652 1.95763 1.20829 0.82752 0.85597 1.03886 1.22528 0.93879 1.08343 0.84273 1.21956 0.92298 1.05885 1.00379 1.21884 0.99085 1.07215 0.93731 1.22575 0.82597 1.05920 0.95463 1.20417 0.90656 0.91411 0.96237 1.60593 1.10323 1.11742 1.49782 1.21852 0.91666 0.98311 0.92694 1.18929 0.94715 0.92057 0.94991 1.21619 1.14565 0.93104 1.28983 0.91796 1.26006 1.00685 0.95025 0.98189 1.70115 1.42731 0.98187 1.46279 0.85391 0.78888 0.77867 0.78542 1.19681 1.20808 1.18615 1.83928 1.17286 1.71468 1.36236 0.91942 0.88429 0.92956 0.90838 0.87142 0.80834 0.81912 0.93293 0.86569 0.84489 0.95668 0.91198 0.98615 0.99227 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -8.56 10.69 -148.98 -1.59 -10.16 16 3 C 0.15 2.70 6.47 71.24 0.46 3.16 16 4 C -0.04 -1.05 6.95 24.83 0.17 -0.88 16 5 C -0.19 -4.52 10.81 22.19 0.24 -4.28 16 6 C -0.20 -5.41 10.81 22.19 0.24 -5.17 16 7 C -0.02 -0.46 6.83 24.83 0.17 -0.29 16 8 C 0.14 4.21 6.22 85.56 0.53 4.74 16 9 N -0.69 -25.52 6.49 -517.92 -3.36 -28.88 16 10 C 0.08 3.48 5.62 86.31 0.49 3.97 16 11 C 0.03 1.65 5.23 29.85 0.16 1.80 16 12 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 13 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 16 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 O -0.19 -5.97 10.65 -2.52 -0.03 -6.00 16 21 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.34 12.67 8.72 -89.70 -0.78 11.89 16 31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -69.35 306.94 2.02 -67.34 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.28 Total: 14.53 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.40 Total: -25.98 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.08 Total: -86.14 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.62 Total: -16.15 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.35 2.02 -67.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273093292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.399 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds