Wall clock time and date at job start Sun Mar 29 2020 22:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46980 * 2 1 4 4 C 1.46898 * 110.99887 * 73.17128 * 3 2 1 5 5 C 1.50696 * 109.47039 * 285.89456 * 4 3 2 6 6 H 1.08005 * 120.00091 * 358.07110 * 5 4 3 7 7 C 1.37874 * 120.00030 * 178.06116 * 5 4 3 8 8 N 1.31512 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00094 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47168 * 90.00341 * 9 7 5 11 11 H 1.48497 * 109.47163 * 210.00320 * 9 7 5 12 12 H 1.48501 * 109.46992 * 330.00267 * 9 7 5 13 13 C 1.46906 * 110.99901 * 197.12183 * 3 2 1 14 14 H 1.08989 * 109.47159 * 186.04687 * 13 3 2 15 15 C 1.52999 * 109.47030 * 306.04810 * 13 3 2 16 16 C 1.50705 * 109.47024 * 66.04587 * 13 3 2 17 17 N 1.29945 * 126.28626 * 314.69366 * 16 13 3 18 18 O 1.21304 * 110.24502 * 179.84295 * 17 16 13 19 19 C 1.33632 * 109.81508 * 0.42198 * 18 17 16 20 20 C 1.50698 * 126.55335 * 179.72013 * 19 18 17 21 21 N 1.31134 * 106.89919 * 359.73791 * 19 18 17 22 22 H 1.08992 * 109.47033 * 47.95740 * 1 2 3 23 23 H 1.09002 * 109.47120 * 167.96051 * 1 2 3 24 24 H 1.09005 * 109.46576 * 287.95618 * 1 2 3 25 25 H 1.09001 * 109.47145 * 240.00404 * 2 1 3 26 26 H 1.09000 * 109.47360 * 120.00053 * 2 1 3 27 27 H 1.08999 * 109.47579 * 45.89609 * 4 3 2 28 28 H 1.08998 * 109.46914 * 165.89574 * 4 3 2 29 29 H 0.97000 * 120.00620 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47369 * 179.97438 * 15 13 3 31 31 H 1.09002 * 109.47129 * 299.99999 * 15 13 3 32 32 H 1.09002 * 109.47406 * 60.00195 * 15 13 3 33 33 H 1.09005 * 109.47056 * 270.02122 * 20 19 18 34 34 H 1.09003 * 109.47424 * 30.02146 * 20 19 18 35 35 H 1.09001 * 109.47554 * 150.02179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8208 2.0136 1.3127 5 6 0.3605 2.3355 1.4994 6 1 -0.3442 2.1255 0.7084 7 6 -0.0760 2.8979 2.6801 8 7 0.7821 3.1540 3.6433 9 14 -1.8863 3.2963 2.9119 10 1 -2.5794 2.1236 3.5033 11 1 -2.0241 4.4628 3.8204 12 1 -2.4945 3.6190 1.5961 13 6 3.4309 1.4445 -0.4038 14 1 3.7980 2.4646 -0.2924 15 6 4.2545 0.5066 0.4811 16 6 3.5598 1.0186 -1.8436 17 7 2.9891 -0.0102 -2.3954 18 8 3.2900 -0.0782 -3.5685 19 6 4.1132 0.9261 -3.8839 20 6 4.7212 1.1973 -5.2359 21 7 4.2911 1.6303 -2.7922 22 1 -0.3633 0.6882 -0.7631 23 1 -0.3633 -1.0051 -0.2144 24 1 -0.3633 0.3168 0.9777 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1450 1.3290 2.0964 28 1 2.4052 2.9320 1.3680 29 1 0.4752 3.5500 4.4738 30 1 5.3015 0.5503 0.1813 31 1 4.1612 0.8146 1.5225 32 1 3.8874 -0.5137 0.3697 33 1 5.6758 0.6772 -5.3159 34 1 4.0473 0.8417 -6.0154 35 1 4.8804 2.2691 -5.3544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278566090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:25 Heat of formation + Delta-G solvation = 55.277243 kcal Electronic energy + Delta-G solvation = -17587.523723 eV Core-core repulsion = 14816.585033 eV Total energy + Delta-G solvation = -2770.938689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.57595 -39.68833 -36.79634 -35.08368 -34.14388 -32.67012 -30.58686 -29.58781 -28.37552 -26.18649 -24.55625 -24.16735 -22.59468 -20.73156 -19.16050 -18.79464 -18.23173 -16.71866 -16.57362 -16.02623 -15.73960 -15.40730 -14.91289 -14.30614 -14.20093 -14.10604 -13.83702 -13.51037 -13.21039 -13.00155 -12.87252 -12.73433 -12.70526 -12.49755 -12.31799 -12.23319 -12.16031 -11.84013 -11.27728 -11.06127 -10.81633 -10.53100 -9.15015 -8.17249 -6.23037 0.26840 1.22076 1.41057 1.41778 1.53174 2.02142 2.39729 2.58685 3.06244 3.15136 3.34753 3.84685 4.00313 4.20019 4.33119 4.49049 4.53940 4.62460 4.63179 4.70354 4.74468 4.82703 4.94592 5.01095 5.07772 5.15922 5.20049 5.22908 5.35354 5.58765 5.71880 6.06030 6.29367 6.52688 6.88839 7.29155 7.43020 8.93783 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.005984 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.058532 B = 4678.398928 C = 4825.474148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.537 5.537 4 C 0.213 3.787 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.163 3.837 14 H 0.095 0.905 15 C -0.165 4.165 16 C 0.184 3.816 17 N -0.391 5.391 18 O 0.071 5.929 19 C 0.183 3.817 20 C -0.057 4.057 21 N -0.510 5.510 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.017 0.983 27 H -0.023 1.023 28 H 0.003 0.997 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 -6.180 -16.159 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.074 4.074 3 N -0.262 5.262 4 C 0.087 3.913 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.052 3.948 14 H 0.113 0.887 15 C -0.224 4.224 16 C -0.089 4.089 17 N -0.101 5.101 18 O 0.014 5.986 19 C -0.036 4.036 20 C -0.114 4.114 21 N -0.245 5.245 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.035 0.965 27 H -0.006 1.006 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.011 -6.051 -15.669 18.202 hybrid contribution -0.308 0.052 1.242 1.281 sum 6.703 -5.998 -14.427 17.002 Atomic orbital electron populations 1.21886 0.94988 1.00068 1.02353 1.22225 0.96809 0.88388 0.99947 1.62229 1.14213 1.18236 1.31534 1.19424 0.96719 0.92170 0.82981 1.21656 0.93865 1.39314 1.00415 0.90838 1.25822 1.02210 0.95772 0.95702 1.70077 1.36111 1.45038 1.06373 0.85490 0.79853 0.77838 0.78126 1.19823 1.20898 1.19177 1.19935 0.90388 1.00096 0.84374 0.88724 1.22302 1.00709 0.99504 0.99934 1.25574 0.94005 0.90130 0.99203 1.74485 1.21583 1.21981 0.92048 1.85251 1.49004 1.44142 1.20214 1.29934 0.89811 0.83960 0.99936 1.20761 1.02163 1.06000 0.82519 1.71834 1.24086 1.28904 0.99668 0.93854 0.92045 0.92269 0.89109 0.96524 1.00562 0.97900 0.92850 0.90412 0.91978 0.92201 0.85675 0.85902 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.48 71.98 0.61 -5.04 16 2 C 0.05 2.29 4.34 86.30 0.37 2.67 16 3 N -0.54 -24.76 4.42 -879.92 -3.89 -28.65 16 4 C 0.21 11.47 4.12 85.56 0.35 11.82 16 5 C -0.51 -29.20 7.09 25.60 0.18 -29.02 16 6 H 0.07 4.11 5.54 -2.91 -0.02 4.09 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.16 6.49 2.85 44.17 0.13 6.61 16 14 H 0.09 3.90 7.84 -2.39 -0.02 3.88 16 15 C -0.16 -5.80 8.50 71.98 0.61 -5.19 16 16 C 0.18 6.68 6.96 138.46 0.96 7.65 16 17 N -0.39 -13.57 9.25 -60.34 -0.56 -14.13 16 18 O 0.07 1.98 11.31 74.93 0.85 2.83 16 19 C 0.18 4.24 8.51 88.38 0.75 4.99 16 20 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 21 N -0.51 -16.17 11.55 -303.23 -3.50 -19.67 16 22 H 0.04 1.85 7.74 -2.39 -0.02 1.83 16 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.06 2.76 5.80 -2.38 -0.01 2.74 16 25 H 0.09 3.61 4.83 -2.39 -0.01 3.60 16 26 H 0.02 0.72 6.97 -2.39 -0.02 0.70 16 27 H -0.02 -1.34 7.16 -2.39 -0.02 -1.36 16 28 H 0.00 0.17 7.77 -2.39 -0.02 0.15 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.06 2.35 7.12 -2.39 -0.02 2.33 16 32 H 0.06 2.08 6.72 -2.39 -0.02 2.06 16 33 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -69.75 284.00 1.48 -68.27 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.09 Total: 5.26 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.18 Total: -4.64 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -7.67 Total: -118.60 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.85 Total: 2.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.75 1.48 -68.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278566090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.544 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds