Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.00161 * 2 1 4 4 C 1.51447 * 109.98668 * 238.71400 * 2 1 3 5 5 O 1.20761 * 126.34253 * 60.32428 * 4 2 1 6 6 C 1.51845 * 107.31575 * 240.29267 * 4 2 1 7 7 C 1.54886 * 104.43378 * 23.78608 * 6 4 2 8 8 C 1.54272 * 109.98844 * 121.29046 * 2 1 3 9 9 H 1.08996 * 110.70053 * 214.85563 * 8 2 1 10 10 C 1.53000 * 110.56968 * 337.66410 * 8 2 1 11 11 C 1.50702 * 109.47302 * 180.78315 * 10 8 2 12 12 O 1.21297 * 119.99810 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99903 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00563 * 359.97438 * 13 11 10 15 15 C 1.37104 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.07994 * 120.00492 * 331.14582 * 15 13 11 17 17 C 1.38956 * 119.99563 * 151.14086 * 15 13 11 18 18 N 1.31406 * 120.00483 * 350.45108 * 17 15 13 19 19 Si 1.86804 * 119.99597 * 170.44488 * 17 15 13 20 20 H 1.48502 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46839 * 120.00493 * 19 17 15 22 22 H 1.48498 * 109.46883 * 240.00147 * 19 17 15 23 23 H 1.09000 * 109.47479 * 298.70677 * 1 2 3 24 24 H 1.09005 * 109.47419 * 58.70694 * 1 2 3 25 25 H 1.08998 * 109.47110 * 178.70673 * 1 2 3 26 26 H 1.09004 * 110.43888 * 265.04866 * 6 4 2 27 27 H 1.09003 * 110.55093 * 142.57765 * 6 4 2 28 28 H 1.08998 * 110.83492 * 204.16823 * 7 6 4 29 29 H 1.09005 * 110.83214 * 80.58647 * 7 6 4 30 30 H 1.08999 * 109.47525 * 60.78024 * 10 8 2 31 31 H 1.09004 * 109.47028 * 300.77767 * 10 8 2 32 32 H 1.08996 * 109.47058 * 264.16685 * 14 13 11 33 33 H 1.08997 * 109.47693 * 144.16272 * 14 13 11 34 34 H 1.09010 * 109.46811 * 24.16131 * 14 13 11 35 35 H 0.96995 * 120.00847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0476 -0.7391 -1.2163 5 8 1.8396 -0.4516 -2.3706 6 6 2.8772 -1.9082 -0.7156 7 6 2.3367 -2.1827 0.7097 8 6 2.0573 -0.7530 1.2389 9 1 2.9753 -0.2945 1.6066 10 6 0.9959 -0.7854 2.3404 11 6 1.5428 -1.5087 3.5440 12 8 2.6706 -1.9549 3.5227 13 7 0.7790 -1.6598 4.6440 14 6 -0.5829 -1.1205 4.6700 15 6 1.2764 -2.3184 5.7389 16 1 2.0224 -3.0890 5.6127 17 6 0.8208 -1.9941 7.0109 18 7 0.0593 -0.9377 7.1867 19 14 1.2909 -3.0600 8.4712 20 1 2.1493 -4.1806 8.0101 21 1 2.0354 -2.2418 9.4619 22 1 0.0619 -3.6046 9.1024 23 1 -0.3634 0.4936 0.9013 24 1 -0.3634 0.5338 -0.8782 25 1 -0.3633 -1.0274 -0.0232 26 1 3.9323 -1.6373 -0.6770 27 1 2.7321 -2.7809 -1.3523 28 1 3.0891 -2.6818 1.3203 29 1 1.4178 -2.7677 0.6699 30 1 0.1097 -1.3050 1.9759 31 1 0.7302 0.2344 2.6191 32 1 -0.5758 -0.1387 5.1432 33 1 -1.2289 -1.7919 5.2357 34 1 -0.9572 -1.0297 3.6503 35 1 -0.2585 -0.7111 8.0746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279672584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = -81.107915 kcal Electronic energy + Delta-G solvation = -17486.452256 eV Core-core repulsion = 14677.306711 eV Total energy + Delta-G solvation = -2809.145545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10731 -38.46088 -36.51284 -34.54834 -31.82997 -31.34420 -29.73191 -26.35294 -25.25052 -24.85651 -23.69219 -20.46380 -19.03334 -18.15201 -16.87162 -16.58771 -15.79224 -15.41770 -14.76210 -14.67761 -14.41909 -13.95908 -13.39646 -13.09650 -12.95867 -12.45723 -12.35609 -11.95272 -11.79584 -11.51748 -11.36377 -11.21884 -11.04835 -10.96722 -10.69899 -10.38178 -10.31758 -10.30176 -10.10565 -9.30243 -9.02532 -8.31371 -7.58299 -6.28125 -3.91439 1.95972 3.15666 3.25658 3.32053 3.93280 4.14150 4.18957 4.52993 4.79287 4.93636 5.11575 5.13925 5.23296 5.35910 5.44780 5.57655 5.72741 5.78028 5.80460 5.87441 6.01907 6.04411 6.14488 6.19434 6.31889 6.39138 6.59525 6.64947 6.83612 7.22772 7.52701 7.57904 8.19548 8.51139 9.21678 9.44871 10.01842 10.75139 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051719 B = 0.005606 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.258368 B = 4993.513964 C = 5386.217632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 H 0.099 0.901 4 C 0.375 3.625 5 O -0.456 6.456 6 C -0.185 4.185 7 C -0.108 4.108 8 C -0.063 4.063 9 H 0.088 0.912 10 C -0.125 4.125 11 C 0.451 3.549 12 O -0.587 6.587 13 N -0.450 5.450 14 C 0.108 3.892 15 C -0.305 4.305 16 H 0.095 0.905 17 C 0.032 3.968 18 N -0.885 5.885 19 Si 0.924 3.076 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 1.174 -9.990 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 H 0.117 0.883 4 C 0.251 3.749 5 O -0.330 6.330 6 C -0.222 4.222 7 C -0.145 4.145 8 C -0.082 4.082 9 H 0.106 0.894 10 C -0.165 4.165 11 C 0.239 3.761 12 O -0.472 6.472 13 N -0.170 5.170 14 C -0.036 4.036 15 C -0.433 4.433 16 H 0.113 0.887 17 C -0.171 4.171 18 N -0.524 5.524 19 Si 0.751 3.249 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.751 1.189 -10.424 10.518 hybrid contribution -0.011 -0.310 1.028 1.074 sum -0.761 0.879 -9.396 9.468 Atomic orbital electron populations 1.21752 0.92711 1.02482 1.02658 1.22364 0.98157 1.01243 0.95415 0.88281 1.25138 0.76306 0.84570 0.88870 1.90370 1.52621 1.67963 1.22003 1.22970 1.01356 0.98578 0.99344 1.22495 1.02078 0.97019 0.92937 1.21622 0.98881 0.95641 0.92027 0.89353 1.21703 0.98762 1.01362 0.94672 1.20153 0.86093 0.84567 0.85314 1.90486 1.19529 1.53706 1.83443 1.43553 1.11400 1.49339 1.12666 1.21529 0.84098 1.00842 0.97128 1.19611 1.23639 1.16412 0.83681 0.88738 1.25388 0.96928 0.96036 0.98788 1.69939 1.35112 1.24161 1.23209 0.85898 0.78274 0.79862 0.80871 1.19271 1.20767 1.20758 0.90791 0.92502 0.92182 0.87940 0.89461 0.88674 0.91491 0.90119 0.90136 0.91674 0.92470 0.95256 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.95 37.15 0.30 -1.28 16 2 C -0.15 -1.89 3.36 -90.74 -0.30 -2.19 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.38 4.99 7.18 -28.10 -0.20 4.78 16 5 O -0.46 -7.26 17.99 6.00 0.11 -7.15 16 6 C -0.18 -2.21 6.72 -26.32 -0.18 -2.39 16 7 C -0.11 -1.53 5.65 -24.69 -0.14 -1.67 16 8 C -0.06 -0.92 2.42 -88.90 -0.22 -1.13 16 9 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 10 C -0.12 -2.06 2.37 -27.88 -0.07 -2.13 16 11 C 0.45 10.28 7.41 -10.99 -0.08 10.19 16 12 O -0.59 -15.06 14.30 5.54 0.08 -14.98 16 13 N -0.45 -11.18 3.00 -122.19 -0.37 -11.54 16 14 C 0.11 2.32 8.62 59.85 0.52 2.84 16 15 C -0.31 -8.37 9.15 -14.93 -0.14 -8.51 16 16 H 0.09 2.71 7.52 -52.49 -0.39 2.32 16 17 C 0.03 0.83 5.18 -17.47 -0.09 0.74 16 18 N -0.88 -23.50 10.88 55.50 0.60 -22.90 16 19 Si 0.92 20.63 29.56 -169.99 -5.03 15.61 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.68 7.63 -51.93 -0.40 0.28 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 29 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 30 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 31 H 0.08 1.25 7.56 -51.93 -0.39 0.86 16 32 H 0.06 1.48 7.19 -51.93 -0.37 1.11 16 33 H 0.06 1.28 7.68 -51.93 -0.40 0.89 16 34 H 0.03 0.50 6.24 -51.92 -0.32 0.18 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 283.51 15.07 4.27 4.27 Total: -1.00 -30.64 283.51 -5.89 -36.53 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.96 Total: 0.90 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.60 Total: -0.74 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.24 Total: -34.44 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.19 Total: -22.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.64 -5.89 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.579 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds