Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.00161 * 2 1 4 4 C 1.51447 * 109.98668 * 238.71400 * 2 1 3 5 5 O 1.20761 * 126.34253 * 60.32428 * 4 2 1 6 6 C 1.51845 * 107.31575 * 240.29267 * 4 2 1 7 7 C 1.54886 * 104.43378 * 23.78608 * 6 4 2 8 8 C 1.54272 * 109.98844 * 121.29046 * 2 1 3 9 9 H 1.08996 * 110.70053 * 214.85563 * 8 2 1 10 10 C 1.53000 * 110.56968 * 337.66410 * 8 2 1 11 11 C 1.50702 * 109.47302 * 180.78315 * 10 8 2 12 12 O 1.21297 * 119.99810 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99903 * 179.97438 * 11 10 8 14 14 C 1.46498 * 120.00563 * 359.97438 * 13 11 10 15 15 C 1.37104 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.07994 * 120.00492 * 331.14582 * 15 13 11 17 17 C 1.38956 * 119.99563 * 151.14086 * 15 13 11 18 18 N 1.31406 * 120.00483 * 350.45108 * 17 15 13 19 19 Si 1.86804 * 119.99597 * 170.44488 * 17 15 13 20 20 H 1.48502 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46839 * 120.00493 * 19 17 15 22 22 H 1.48498 * 109.46883 * 240.00147 * 19 17 15 23 23 H 1.09000 * 109.47479 * 298.70677 * 1 2 3 24 24 H 1.09005 * 109.47419 * 58.70694 * 1 2 3 25 25 H 1.08998 * 109.47110 * 178.70673 * 1 2 3 26 26 H 1.09004 * 110.43888 * 265.04866 * 6 4 2 27 27 H 1.09003 * 110.55093 * 142.57765 * 6 4 2 28 28 H 1.08998 * 110.83492 * 204.16823 * 7 6 4 29 29 H 1.09005 * 110.83214 * 80.58647 * 7 6 4 30 30 H 1.08999 * 109.47525 * 60.78024 * 10 8 2 31 31 H 1.09004 * 109.47028 * 300.77767 * 10 8 2 32 32 H 1.08996 * 109.47058 * 264.16685 * 14 13 11 33 33 H 1.08997 * 109.47693 * 144.16272 * 14 13 11 34 34 H 1.09010 * 109.46811 * 24.16131 * 14 13 11 35 35 H 0.96995 * 120.00847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0476 -0.7391 -1.2163 5 8 1.8396 -0.4516 -2.3706 6 6 2.8772 -1.9082 -0.7156 7 6 2.3367 -2.1827 0.7097 8 6 2.0573 -0.7530 1.2389 9 1 2.9753 -0.2945 1.6066 10 6 0.9959 -0.7854 2.3404 11 6 1.5428 -1.5087 3.5440 12 8 2.6706 -1.9549 3.5227 13 7 0.7790 -1.6598 4.6440 14 6 -0.5829 -1.1205 4.6700 15 6 1.2764 -2.3184 5.7389 16 1 2.0224 -3.0890 5.6127 17 6 0.8208 -1.9941 7.0109 18 7 0.0593 -0.9377 7.1867 19 14 1.2909 -3.0600 8.4712 20 1 2.1493 -4.1806 8.0101 21 1 2.0354 -2.2418 9.4619 22 1 0.0619 -3.6046 9.1024 23 1 -0.3634 0.4936 0.9013 24 1 -0.3634 0.5338 -0.8782 25 1 -0.3633 -1.0274 -0.0232 26 1 3.9323 -1.6373 -0.6770 27 1 2.7321 -2.7809 -1.3523 28 1 3.0891 -2.6818 1.3203 29 1 1.4178 -2.7677 0.6699 30 1 0.1097 -1.3050 1.9759 31 1 0.7302 0.2344 2.6191 32 1 -0.5758 -0.1387 5.1432 33 1 -1.2289 -1.7919 5.2357 34 1 -0.9572 -1.0297 3.6503 35 1 -0.2585 -0.7111 8.0746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279672584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = -99.635357 kcal Electronic energy + Delta-G solvation = -17487.255666 eV Core-core repulsion = 14677.306711 eV Total energy + Delta-G solvation = -2809.948955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29526 -40.10225 -37.79746 -36.42773 -33.66213 -32.51487 -31.04909 -28.14799 -26.76658 -25.90914 -25.26672 -21.78580 -20.39855 -19.43922 -18.80124 -18.01046 -17.23881 -16.69798 -16.36359 -16.10086 -15.79900 -15.64021 -14.82561 -14.34511 -14.19273 -13.81898 -13.61039 -13.36135 -13.23535 -13.00587 -12.90816 -12.77210 -12.70609 -12.36959 -12.18413 -12.08304 -11.76511 -11.53967 -11.30659 -10.98144 -10.38415 -10.13937 -9.53025 -8.26406 -5.97688 0.91577 1.37923 1.42262 1.55379 2.14914 2.31373 3.09881 3.15091 3.17477 3.57567 3.77786 3.91793 4.22660 4.24758 4.33606 4.41114 4.52830 4.57500 4.69724 4.77423 4.87557 4.94897 4.97478 5.06544 5.08009 5.15361 5.28291 5.42546 5.45641 5.46943 5.50955 6.19475 6.48581 6.56914 7.24996 7.57466 8.14257 8.74683 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051719 B = 0.005606 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.258368 B = 4993.513964 C = 5386.217632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 H 0.114 0.886 4 C 0.382 3.618 5 O -0.482 6.482 6 C -0.176 4.176 7 C -0.108 4.108 8 C -0.061 4.061 9 H 0.074 0.926 10 C -0.113 4.113 11 C 0.443 3.557 12 O -0.623 6.623 13 N -0.472 5.472 14 C 0.117 3.883 15 C -0.338 4.338 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.901 5.901 19 Si 0.984 3.016 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 1.624 -10.691 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 H 0.132 0.868 4 C 0.259 3.741 5 O -0.358 6.358 6 C -0.214 4.214 7 C -0.145 4.145 8 C -0.080 4.080 9 H 0.092 0.908 10 C -0.152 4.152 11 C 0.233 3.767 12 O -0.510 6.510 13 N -0.192 5.192 14 C -0.026 4.026 15 C -0.467 4.467 16 H 0.086 0.914 17 C -0.205 4.205 18 N -0.540 5.540 19 Si 0.809 3.191 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.621 1.651 -11.128 11.366 hybrid contribution 0.297 -0.449 1.228 1.341 sum -1.324 1.202 -9.900 10.060 Atomic orbital electron populations 1.21798 0.91533 1.02931 1.03557 1.22277 0.99031 1.01414 0.93433 0.86838 1.25240 0.75684 0.84567 0.88572 1.90376 1.53679 1.68755 1.22943 1.22921 1.01782 0.98812 0.97858 1.22403 1.01560 0.96678 0.93873 1.21552 0.97870 0.96188 0.92403 0.90785 1.21697 0.99828 1.01489 0.92207 1.21251 0.85611 0.83588 0.86269 1.90462 1.21296 1.54910 1.84297 1.43845 1.12844 1.49784 1.12676 1.21473 0.82415 0.99151 0.99562 1.19557 1.24388 1.17214 0.85522 0.91422 1.26082 0.96669 0.97068 1.00663 1.70015 1.35255 1.24765 1.23968 0.85005 0.78305 0.78133 0.77686 1.19798 1.20386 1.19279 0.89714 0.91876 0.91968 0.86714 0.88108 0.91419 0.91112 0.87648 0.88353 0.93184 0.94138 0.90623 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.95 71.98 0.57 -2.14 16 2 C -0.14 -3.12 3.36 -10.87 -0.04 -3.16 16 3 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 4 C 0.38 9.24 7.18 29.71 0.21 9.46 16 5 O -0.48 -14.33 17.99 -1.45 -0.03 -14.36 16 6 C -0.18 -3.88 6.72 30.86 0.21 -3.68 16 7 C -0.11 -2.93 5.65 31.92 0.18 -2.75 16 8 C -0.06 -1.68 2.42 -9.68 -0.02 -1.70 16 9 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 10 C -0.11 -3.47 2.37 29.85 0.07 -3.40 16 11 C 0.44 20.11 7.41 87.66 0.65 20.76 16 12 O -0.62 -32.65 14.30 -3.08 -0.04 -32.70 16 13 N -0.47 -23.48 3.00 -658.88 -1.98 -25.46 16 14 C 0.12 4.92 8.62 127.77 1.10 6.02 16 15 C -0.34 -18.96 9.15 84.04 0.77 -18.19 16 16 H 0.07 4.05 7.52 -2.91 -0.02 4.03 16 17 C 0.00 -0.19 5.18 84.93 0.44 0.25 16 18 N -0.90 -47.72 10.88 21.66 0.24 -47.49 16 19 Si 0.98 42.46 29.56 68.60 2.03 44.49 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H 0.08 1.46 6.63 -2.39 -0.02 1.45 16 24 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.18 7.63 -2.39 -0.02 1.16 16 26 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.24 7.11 -2.39 -0.02 2.22 16 29 H 0.07 1.86 8.02 -2.38 -0.02 1.84 16 30 H 0.11 2.77 5.95 -2.39 -0.01 2.75 16 31 H 0.10 2.74 7.56 -2.38 -0.02 2.72 16 32 H 0.05 2.24 7.19 -2.39 -0.02 2.22 16 33 H 0.04 1.80 7.68 -2.39 -0.02 1.78 16 34 H 0.08 2.40 6.24 -2.38 -0.01 2.38 16 35 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -66.87 283.51 5.44 -61.43 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.08 Total: 12.62 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.14 Total: 1.46 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.74 Total: -72.95 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.07 Total: -47.05 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.87 5.44 -61.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.204 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds