Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.97300 * 2 1 4 4 C 1.51635 * 109.91850 * 238.67182 * 2 1 3 5 5 O 1.20762 * 126.44053 * 60.97902 * 4 2 1 6 6 C 1.51842 * 107.21852 * 240.86672 * 4 2 1 7 7 C 1.54883 * 104.54522 * 336.36016 * 6 4 2 8 8 C 1.54281 * 109.98277 * 121.26556 * 2 1 3 9 9 H 1.09005 * 110.69724 * 23.88749 * 8 2 1 10 10 C 1.52993 * 110.57163 * 261.07821 * 8 2 1 11 11 C 1.50706 * 109.47253 * 179.21602 * 10 8 2 12 12 O 1.21291 * 120.00044 * 0.02562 * 11 10 8 13 13 N 1.34779 * 120.00055 * 179.97438 * 11 10 8 14 14 C 1.46496 * 119.99954 * 359.97438 * 13 11 10 15 15 C 1.37095 * 119.99863 * 179.97438 * 13 11 10 16 16 H 1.08004 * 119.99788 * 21.70869 * 15 13 11 17 17 C 1.38952 * 119.99905 * 201.70336 * 15 13 11 18 18 N 1.31412 * 119.99988 * 11.34502 * 17 15 13 19 19 Si 1.86797 * 119.99827 * 191.34672 * 17 15 13 20 20 H 1.48498 * 109.47541 * 85.07133 * 19 17 15 21 21 H 1.48505 * 109.46765 * 205.07303 * 19 17 15 22 22 H 1.48498 * 109.47168 * 325.07139 * 19 17 15 23 23 H 1.09003 * 109.47485 * 298.73046 * 1 2 3 24 24 H 1.09001 * 109.47480 * 58.73160 * 1 2 3 25 25 H 1.08999 * 109.47388 * 178.73379 * 1 2 3 26 26 H 1.09005 * 110.44371 * 217.56329 * 6 4 2 27 27 H 1.08996 * 110.44386 * 95.16295 * 6 4 2 28 28 H 1.08998 * 110.83565 * 155.77340 * 7 6 4 29 29 H 1.09001 * 110.83784 * 279.15533 * 7 6 4 30 30 H 1.09003 * 109.46933 * 299.21415 * 10 8 2 31 31 H 1.08994 * 109.47305 * 59.21683 * 10 8 2 32 32 H 1.09008 * 109.47122 * 92.17444 * 14 13 11 33 33 H 1.08993 * 109.47399 * 212.17703 * 14 13 11 34 34 H 1.08999 * 109.47174 * 332.17847 * 14 13 11 35 35 H 0.96999 * 119.99689 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0466 -0.7412 -1.2178 5 8 1.8479 -0.4497 -2.3727 6 6 2.8636 -1.9181 -0.7146 7 6 3.3057 -1.5035 0.7107 8 6 2.0572 -0.7525 1.2394 9 1 1.3127 -1.4588 1.6069 10 6 2.4497 0.2342 2.3407 11 6 2.9423 -0.5267 3.5447 12 8 2.9766 -1.7389 3.5237 13 7 3.3458 0.1399 4.6445 14 6 3.3060 1.6041 4.6692 15 6 3.7934 -0.5523 5.7399 16 1 4.1556 -1.5637 5.6286 17 6 3.7812 0.0474 6.9933 18 7 3.1422 1.1815 7.1729 19 14 4.6732 -0.7587 8.4230 20 1 6.1029 -0.3577 8.4040 21 1 4.0541 -0.3241 9.7009 22 1 4.5716 -2.2351 8.3007 23 1 -0.3634 0.4940 0.9012 24 1 -0.3634 0.5334 -0.8784 25 1 -0.3634 -1.0274 -0.0227 26 1 3.7336 -2.0777 -1.3516 27 1 2.2505 -2.8185 -0.6762 28 1 3.5177 -2.3811 1.3215 29 1 4.1715 -0.8425 0.6713 30 1 3.2409 0.8895 1.9764 31 1 1.5820 0.8322 2.6190 32 1 2.3530 1.9348 5.0825 33 1 4.1204 1.9793 5.2888 34 1 3.4147 1.9878 3.6548 35 1 3.1334 1.5999 8.0479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279672585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = -83.222092 kcal Electronic energy + Delta-G solvation = -17366.448323 eV Core-core repulsion = 14557.211100 eV Total energy + Delta-G solvation = -2809.237222 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00177 -38.46117 -36.42943 -34.57663 -31.72369 -31.38357 -30.12028 -26.37443 -25.15750 -24.54099 -23.58877 -20.61235 -18.97975 -18.65602 -16.86003 -16.22346 -15.77227 -15.51475 -14.67771 -14.50105 -14.26375 -13.96612 -13.66243 -13.30193 -12.88746 -12.53203 -12.22438 -12.04861 -11.71570 -11.55113 -11.35898 -11.19972 -11.07637 -10.89536 -10.71390 -10.41475 -10.35789 -10.31227 -10.16882 -9.31521 -9.01689 -8.32096 -7.67907 -6.30487 -3.86737 1.96345 3.16545 3.24747 3.29658 3.91988 4.12460 4.18945 4.52750 4.74960 5.00327 5.08312 5.14372 5.24475 5.36279 5.44756 5.59367 5.66316 5.73776 5.79807 5.92835 6.00194 6.07117 6.13755 6.15126 6.32380 6.39952 6.58076 6.67501 6.89340 7.23571 7.53001 7.56851 8.14037 8.49685 9.20347 9.45117 10.00660 10.73037 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049978 B = 0.005424 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.107767 B = 5160.581919 C = 5462.205112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.153 4.153 3 H 0.102 0.898 4 C 0.375 3.625 5 O -0.456 6.456 6 C -0.185 4.185 7 C -0.109 4.109 8 C -0.062 4.062 9 H 0.090 0.910 10 C -0.123 4.123 11 C 0.447 3.553 12 O -0.589 6.589 13 N -0.450 5.450 14 C 0.113 3.887 15 C -0.305 4.305 16 H 0.098 0.902 17 C 0.029 3.971 18 N -0.886 5.886 19 Si 0.926 3.074 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 0.649 -9.887 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 H 0.120 0.880 4 C 0.251 3.749 5 O -0.330 6.330 6 C -0.222 4.222 7 C -0.146 4.146 8 C -0.081 4.081 9 H 0.108 0.892 10 C -0.163 4.163 11 C 0.235 3.765 12 O -0.474 6.474 13 N -0.168 5.168 14 C -0.031 4.031 15 C -0.433 4.433 16 H 0.116 0.884 17 C -0.174 4.174 18 N -0.525 5.525 19 Si 0.753 3.247 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.195 1.195 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.913 0.362 -10.316 10.498 hybrid contribution 0.404 -0.020 1.006 1.084 sum -1.509 0.342 -9.310 9.438 Atomic orbital electron populations 1.21666 0.92725 1.02404 1.02554 1.22451 0.97903 1.01524 0.95364 0.88016 1.25167 0.75784 0.85103 0.88861 1.90371 1.52380 1.68314 1.21902 1.22964 1.01095 0.98831 0.99325 1.22493 0.97178 1.02014 0.92957 1.21670 0.97981 0.96469 0.91944 0.89209 1.21595 1.01528 0.98326 0.94894 1.20006 0.83190 0.88073 0.85230 1.90483 1.59562 1.13972 1.83434 1.43620 1.55073 1.05520 1.12632 1.21499 1.03410 0.81182 0.96997 1.19657 1.38755 1.00064 0.84796 0.88385 1.25327 0.96906 0.96584 0.98574 1.70000 1.40175 1.18316 1.24056 0.85944 0.79194 0.79621 0.79945 1.20375 1.21001 1.19456 0.91250 0.92352 0.92338 0.89484 0.87975 0.88652 0.91445 0.90534 0.90246 0.92528 0.91308 0.95593 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.08 37.16 0.34 -1.19 16 2 C -0.15 -1.90 3.02 -90.64 -0.27 -2.17 16 3 H 0.10 1.19 7.83 -51.93 -0.41 0.78 16 4 C 0.37 5.00 7.19 -28.01 -0.20 4.79 16 5 O -0.46 -7.27 17.99 6.00 0.11 -7.16 16 6 C -0.18 -2.21 6.71 -26.33 -0.18 -2.39 16 7 C -0.11 -1.55 5.65 -24.69 -0.14 -1.69 16 8 C -0.06 -0.90 2.03 -88.90 -0.18 -1.08 16 9 H 0.09 1.42 7.74 -51.93 -0.40 1.01 16 10 C -0.12 -2.05 3.59 -27.88 -0.10 -2.15 16 11 C 0.45 10.20 7.41 -10.98 -0.08 10.12 16 12 O -0.59 -15.09 14.22 5.55 0.08 -15.01 16 13 N -0.45 -11.19 3.02 -122.19 -0.37 -11.56 16 14 C 0.11 2.46 8.52 59.84 0.51 2.97 16 15 C -0.30 -8.35 9.31 -14.93 -0.14 -8.49 16 16 H 0.10 2.81 7.39 -52.48 -0.39 2.42 16 17 C 0.03 0.75 5.12 -17.47 -0.09 0.66 16 18 N -0.89 -23.36 10.56 55.50 0.59 -22.78 16 19 Si 0.93 20.57 29.57 -169.99 -5.03 15.55 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.56 7.11 -51.93 -0.37 1.20 16 29 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.08 1.15 7.36 -51.93 -0.38 0.77 16 31 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.06 1.28 7.56 -51.92 -0.39 0.89 16 33 H 0.07 1.59 7.00 -51.93 -0.36 1.23 16 34 H 0.03 0.46 6.36 -51.93 -0.33 0.13 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 287.83 15.07 4.34 4.34 Total: -1.00 -30.36 287.83 -5.94 -36.30 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.12 Total: 0.95 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.53 Total: -0.63 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.22 Total: -34.34 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.19 Total: -22.17 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.36 -5.94 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.925 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds