Wall clock time and date at job start Sun Mar 29 2020 21:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.97300 * 2 1 4 4 C 1.51635 * 109.91850 * 238.67182 * 2 1 3 5 5 O 1.20762 * 126.44053 * 60.97902 * 4 2 1 6 6 C 1.51842 * 107.21852 * 240.86672 * 4 2 1 7 7 C 1.54883 * 104.54522 * 336.36016 * 6 4 2 8 8 C 1.54281 * 109.98277 * 121.26556 * 2 1 3 9 9 H 1.09005 * 110.69724 * 23.88749 * 8 2 1 10 10 C 1.52993 * 110.57163 * 261.07821 * 8 2 1 11 11 C 1.50706 * 109.47253 * 179.21602 * 10 8 2 12 12 O 1.21291 * 120.00044 * 0.02562 * 11 10 8 13 13 N 1.34779 * 120.00055 * 179.97438 * 11 10 8 14 14 C 1.46496 * 119.99954 * 359.97438 * 13 11 10 15 15 C 1.37095 * 119.99863 * 179.97438 * 13 11 10 16 16 H 1.08004 * 119.99788 * 21.70869 * 15 13 11 17 17 C 1.38952 * 119.99905 * 201.70336 * 15 13 11 18 18 N 1.31412 * 119.99988 * 11.34502 * 17 15 13 19 19 Si 1.86797 * 119.99827 * 191.34672 * 17 15 13 20 20 H 1.48498 * 109.47541 * 85.07133 * 19 17 15 21 21 H 1.48505 * 109.46765 * 205.07303 * 19 17 15 22 22 H 1.48498 * 109.47168 * 325.07139 * 19 17 15 23 23 H 1.09003 * 109.47485 * 298.73046 * 1 2 3 24 24 H 1.09001 * 109.47480 * 58.73160 * 1 2 3 25 25 H 1.08999 * 109.47388 * 178.73379 * 1 2 3 26 26 H 1.09005 * 110.44371 * 217.56329 * 6 4 2 27 27 H 1.08996 * 110.44386 * 95.16295 * 6 4 2 28 28 H 1.08998 * 110.83565 * 155.77340 * 7 6 4 29 29 H 1.09001 * 110.83784 * 279.15533 * 7 6 4 30 30 H 1.09003 * 109.46933 * 299.21415 * 10 8 2 31 31 H 1.08994 * 109.47305 * 59.21683 * 10 8 2 32 32 H 1.09008 * 109.47122 * 92.17444 * 14 13 11 33 33 H 1.08993 * 109.47399 * 212.17703 * 14 13 11 34 34 H 1.08999 * 109.47174 * 332.17847 * 14 13 11 35 35 H 0.96999 * 119.99689 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0466 -0.7412 -1.2178 5 8 1.8479 -0.4497 -2.3727 6 6 2.8636 -1.9181 -0.7146 7 6 3.3057 -1.5035 0.7107 8 6 2.0572 -0.7525 1.2394 9 1 1.3127 -1.4588 1.6069 10 6 2.4497 0.2342 2.3407 11 6 2.9423 -0.5267 3.5447 12 8 2.9766 -1.7389 3.5237 13 7 3.3458 0.1399 4.6445 14 6 3.3060 1.6041 4.6692 15 6 3.7934 -0.5523 5.7399 16 1 4.1556 -1.5637 5.6286 17 6 3.7812 0.0474 6.9933 18 7 3.1422 1.1815 7.1729 19 14 4.6732 -0.7587 8.4230 20 1 6.1029 -0.3577 8.4040 21 1 4.0541 -0.3241 9.7009 22 1 4.5716 -2.2351 8.3007 23 1 -0.3634 0.4940 0.9012 24 1 -0.3634 0.5334 -0.8784 25 1 -0.3634 -1.0274 -0.0227 26 1 3.7336 -2.0777 -1.3516 27 1 2.2505 -2.8185 -0.6762 28 1 3.5177 -2.3811 1.3215 29 1 4.1715 -0.8425 0.6713 30 1 3.2409 0.8895 1.9764 31 1 1.5820 0.8322 2.6190 32 1 2.3530 1.9348 5.0825 33 1 4.1204 1.9793 5.2888 34 1 3.4147 1.9878 3.6548 35 1 3.1334 1.5999 8.0479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279672585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:20 Heat of formation + Delta-G solvation = -101.311561 kcal Electronic energy + Delta-G solvation = -17367.232741 eV Core-core repulsion = 14557.211100 eV Total energy + Delta-G solvation = -2810.021641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19151 -40.12085 -37.71014 -36.44442 -33.63714 -32.40268 -31.49361 -28.18802 -26.73671 -25.59611 -25.10680 -21.88757 -20.32043 -20.02021 -18.80643 -17.76587 -17.12569 -16.70989 -16.38840 -16.06750 -15.74522 -15.42304 -14.80900 -14.59693 -14.15812 -14.02090 -13.57720 -13.30556 -13.18914 -13.12948 -12.95892 -12.64835 -12.61426 -12.37590 -12.14012 -12.11699 -11.79913 -11.55983 -11.44482 -10.96241 -10.44395 -10.11127 -9.62266 -8.28040 -5.92325 0.91646 1.39565 1.42486 1.53691 2.13621 2.30613 3.08737 3.15112 3.17607 3.58200 3.76477 3.90451 4.23305 4.26732 4.34789 4.39952 4.53292 4.54727 4.62257 4.79022 4.88837 4.93497 5.01074 5.07182 5.07929 5.13857 5.27162 5.38005 5.46511 5.48760 5.50174 6.15486 6.48582 6.54925 7.23909 7.57534 8.13282 8.73209 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049978 B = 0.005424 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.107767 B = 5160.581919 C = 5462.205112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 H 0.118 0.882 4 C 0.381 3.619 5 O -0.482 6.482 6 C -0.176 4.176 7 C -0.109 4.109 8 C -0.059 4.059 9 H 0.075 0.925 10 C -0.113 4.113 11 C 0.440 3.560 12 O -0.624 6.624 13 N -0.471 5.471 14 C 0.123 3.877 15 C -0.340 4.340 16 H 0.072 0.928 17 C -0.005 4.005 18 N -0.900 5.900 19 Si 0.986 3.014 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.277 1.277 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 1.548 -10.615 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 H 0.136 0.864 4 C 0.259 3.741 5 O -0.357 6.357 6 C -0.213 4.213 7 C -0.147 4.147 8 C -0.078 4.078 9 H 0.093 0.907 10 C -0.152 4.152 11 C 0.230 3.770 12 O -0.511 6.511 13 N -0.191 5.191 14 C -0.020 4.020 15 C -0.468 4.468 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.540 5.540 19 Si 0.810 3.190 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.202 1.202 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.027 1.283 -11.047 11.305 hybrid contribution 0.422 -0.338 1.219 1.333 sum -1.605 0.945 -9.829 10.003 Atomic orbital electron populations 1.21688 0.91709 1.02732 1.03245 1.22354 0.98652 1.01766 0.93422 0.86407 1.25263 0.75193 0.85075 0.88557 1.90376 1.53526 1.68993 1.22833 1.22912 1.01687 0.98867 0.97861 1.22407 0.97339 1.01031 0.93884 1.21591 0.97840 0.96077 0.92274 0.90664 1.21588 1.02711 0.98452 0.92498 1.21092 0.81620 0.88117 0.86145 1.90460 1.60470 1.15933 1.84267 1.43907 1.55783 1.06719 1.12674 1.21425 1.01855 0.79523 0.99216 1.19602 1.40761 0.99792 0.86634 0.91055 1.26024 0.97162 0.97114 1.00320 1.70077 1.40296 1.18859 1.24745 0.85052 0.78556 0.78214 0.77157 1.19286 1.20006 1.20160 0.90511 0.91697 0.92313 0.88090 0.86819 0.91389 0.91015 0.88002 0.88459 0.93791 0.93288 0.91125 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.08 71.98 0.65 -2.05 16 2 C -0.14 -3.14 3.02 -10.81 -0.03 -3.18 16 3 H 0.12 2.28 7.83 -2.39 -0.02 2.27 16 4 C 0.38 9.25 7.19 29.77 0.21 9.47 16 5 O -0.48 -14.33 17.99 -1.46 -0.03 -14.35 16 6 C -0.18 -3.88 6.71 30.86 0.21 -3.67 16 7 C -0.11 -2.97 5.65 31.92 0.18 -2.79 16 8 C -0.06 -1.61 2.03 -9.68 -0.02 -1.63 16 9 H 0.07 2.30 7.74 -2.38 -0.02 2.29 16 10 C -0.11 -3.50 3.59 29.85 0.11 -3.39 16 11 C 0.44 20.00 7.41 87.66 0.65 20.65 16 12 O -0.62 -32.63 14.22 -3.06 -0.04 -32.67 16 13 N -0.47 -23.53 3.02 -658.89 -1.99 -25.52 16 14 C 0.12 5.22 8.52 127.77 1.09 6.31 16 15 C -0.34 -19.02 9.31 84.04 0.78 -18.24 16 16 H 0.07 4.27 7.39 -2.91 -0.02 4.25 16 17 C -0.01 -0.27 5.12 84.93 0.43 0.16 16 18 N -0.90 -47.38 10.56 21.66 0.23 -47.15 16 19 Si 0.99 42.30 29.57 68.60 2.03 44.33 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.25 7.11 -2.39 -0.02 2.23 16 29 H 0.07 1.88 8.03 -2.39 -0.02 1.86 16 30 H 0.10 2.69 7.36 -2.39 -0.02 2.67 16 31 H 0.10 2.73 8.11 -2.39 -0.02 2.71 16 32 H 0.04 1.95 7.56 -2.38 -0.02 1.93 16 33 H 0.05 2.24 7.00 -2.39 -0.02 2.22 16 34 H 0.07 2.30 6.36 -2.39 -0.02 2.29 16 35 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -66.16 287.83 5.54 -60.62 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.07 Total: 13.11 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.27 Total: 1.64 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.76 Total: -72.67 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.07 Total: -47.02 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -66.16 5.54 -60.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.688 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds