Wall clock time and date at job start Sun Mar 29 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.99884 * 2 1 4 4 C 1.51448 * 109.98736 * 121.28717 * 2 1 3 5 5 O 1.20761 * 126.34386 * 298.97743 * 4 2 1 6 6 C 1.51842 * 107.31594 * 118.99390 * 4 2 1 7 7 C 1.54890 * 104.43633 * 23.79149 * 6 4 2 8 8 C 1.54284 * 109.98788 * 238.70933 * 2 1 3 9 9 H 1.08997 * 110.56374 * 336.24098 * 8 2 1 10 10 C 1.53000 * 110.56872 * 98.95889 * 8 2 1 11 11 C 1.50706 * 109.46674 * 185.00126 * 10 8 2 12 12 O 1.21293 * 120.00001 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99712 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00039 * 359.97438 * 13 11 10 15 15 C 1.37102 * 119.99735 * 180.02562 * 13 11 10 16 16 H 1.07995 * 120.00129 * 339.69961 * 15 13 11 17 17 C 1.38952 * 119.99578 * 159.70652 * 15 13 11 18 18 N 1.31409 * 120.00368 * 344.32873 * 17 15 13 19 19 Si 1.86802 * 119.99507 * 164.32820 * 17 15 13 20 20 H 1.48503 * 109.47216 * 265.41172 * 19 17 15 21 21 H 1.48497 * 109.47184 * 145.41054 * 19 17 15 22 22 H 1.48500 * 109.47245 * 25.41150 * 19 17 15 23 23 H 1.08997 * 109.46857 * 181.29248 * 1 2 3 24 24 H 1.08995 * 109.47247 * 301.29202 * 1 2 3 25 25 H 1.09006 * 109.47177 * 61.29282 * 1 2 3 26 26 H 1.09000 * 110.44240 * 142.53273 * 6 4 2 27 27 H 1.09002 * 110.44358 * 264.93308 * 6 4 2 28 28 H 1.09000 * 110.83916 * 204.16328 * 7 6 4 29 29 H 1.09000 * 110.83240 * 80.58356 * 7 6 4 30 30 H 1.08994 * 109.47253 * 65.00305 * 10 8 2 31 31 H 1.09003 * 109.47182 * 305.00037 * 10 8 2 32 32 H 1.09005 * 109.47000 * 265.54525 * 14 13 11 33 33 H 1.09001 * 109.46899 * 25.54560 * 14 13 11 34 34 H 1.08996 * 109.47041 * 145.54649 * 14 13 11 35 35 H 0.96998 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0476 -0.7391 1.2163 5 8 1.8494 -0.4449 2.3706 6 6 2.8624 -1.9185 0.7155 7 6 3.3052 -1.5045 -0.7098 8 6 2.0573 -0.7531 -1.2390 9 1 1.3104 -1.4571 -1.6057 10 6 2.4507 0.2334 -2.3404 11 6 2.8451 -0.5285 -3.5795 12 8 2.8140 -1.7410 -3.5815 13 7 3.2322 0.1376 -4.6854 14 6 3.2692 1.6022 -4.6831 15 6 3.5905 -0.5554 -5.8128 16 1 3.8806 -1.5931 -5.7394 17 6 3.5804 0.0774 -7.0498 18 7 2.9478 1.2195 -7.1985 19 14 4.4662 -0.6956 -8.5015 20 1 5.8333 -0.1254 -8.6079 21 1 3.7129 -0.4116 -9.7493 22 1 4.5566 -2.1642 -8.3013 23 1 -0.3633 -1.0274 0.0232 24 1 -0.3633 0.5337 0.8781 25 1 -0.3634 0.4936 -0.9014 26 1 3.7320 -2.0785 1.3529 27 1 2.2477 -2.8179 0.6790 28 1 3.5170 -2.3823 -1.3204 29 1 4.1692 -0.8412 -0.6700 30 1 3.2920 0.8384 -2.0028 31 1 1.6043 0.8819 -2.5666 32 1 2.3323 1.9899 -5.0832 33 1 3.4044 1.9606 -3.6626 34 1 4.0982 1.9457 -5.3017 35 1 2.9405 1.6611 -8.0621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279672588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:22 Heat of formation + Delta-G solvation = -83.576575 kcal Electronic energy + Delta-G solvation = -17356.401369 eV Core-core repulsion = 14547.148775 eV Total energy + Delta-G solvation = -2809.252594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01537 -38.46082 -36.43922 -34.57741 -31.73123 -31.39876 -30.12690 -26.37781 -25.17036 -24.55635 -23.60461 -20.61377 -18.97975 -18.66552 -16.86264 -16.23679 -15.78661 -15.50429 -14.67341 -14.51196 -14.27332 -13.97225 -13.66473 -13.31083 -12.87600 -12.53907 -12.24581 -12.05263 -11.72182 -11.54037 -11.38038 -11.23474 -11.10022 -10.91582 -10.71954 -10.41691 -10.33924 -10.30943 -10.16632 -9.31865 -9.03415 -8.33190 -7.68578 -6.31743 -3.85421 1.95704 3.15461 3.25138 3.30606 3.91422 4.12517 4.18612 4.52562 4.73743 4.99315 5.07694 5.13866 5.23379 5.35127 5.44308 5.58352 5.66066 5.73951 5.79043 5.92527 5.99927 6.05956 6.13318 6.14269 6.30762 6.38721 6.53492 6.67136 6.85996 7.20942 7.52363 7.57499 8.13393 8.49179 9.20198 9.45132 10.00593 10.72014 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050187 B = 0.005402 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.776602 B = 5182.329483 C = 5469.152738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.154 4.154 3 H 0.102 0.898 4 C 0.375 3.625 5 O -0.456 6.456 6 C -0.184 4.184 7 C -0.110 4.110 8 C -0.063 4.063 9 H 0.091 0.909 10 C -0.123 4.123 11 C 0.446 3.554 12 O -0.590 6.590 13 N -0.449 5.449 14 C 0.111 3.889 15 C -0.307 4.307 16 H 0.100 0.900 17 C 0.029 3.971 18 N -0.882 5.882 19 Si 0.924 3.076 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.269 1.269 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 0.641 10.094 10.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 H 0.120 0.880 4 C 0.251 3.749 5 O -0.330 6.330 6 C -0.221 4.221 7 C -0.147 4.147 8 C -0.081 4.081 9 H 0.110 0.890 10 C -0.163 4.163 11 C 0.234 3.766 12 O -0.475 6.475 13 N -0.168 5.168 14 C -0.033 4.033 15 C -0.435 4.435 16 H 0.117 0.883 17 C -0.173 4.173 18 N -0.522 5.522 19 Si 0.751 3.249 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.193 1.193 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.301 0.358 10.519 10.605 hybrid contribution 0.415 0.006 -1.017 1.099 sum -0.886 0.364 9.501 9.549 Atomic orbital electron populations 1.21662 0.92678 1.02426 1.02565 1.22421 0.97944 1.01545 0.95377 0.88020 1.25122 0.75791 0.85119 0.88880 1.90371 1.52327 1.68267 1.21998 1.22954 1.01128 0.98841 0.99222 1.22489 0.97260 1.01848 0.93099 1.21690 0.98006 0.96521 0.91920 0.89038 1.21598 1.01747 0.98346 0.94657 1.19994 0.83116 0.88168 0.85287 1.90489 1.58603 1.13978 1.84426 1.43633 1.56719 1.05540 1.10890 1.21502 1.03345 0.81321 0.97110 1.19675 1.42233 0.97591 0.83953 0.88275 1.25299 0.96822 0.96559 0.98665 1.70019 1.39478 1.17590 1.25088 0.85947 0.79120 0.79638 0.80230 1.20486 1.21015 1.19349 0.92323 0.92351 0.91227 0.89467 0.87931 0.88882 0.91381 0.90525 0.90237 0.92171 0.95333 0.91805 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.08 37.16 0.34 -1.20 16 2 C -0.15 -1.91 3.01 -90.73 -0.27 -2.18 16 3 H 0.10 1.18 7.83 -51.93 -0.41 0.78 16 4 C 0.37 4.97 7.18 -28.10 -0.20 4.77 16 5 O -0.46 -7.24 17.99 6.00 0.11 -7.13 16 6 C -0.18 -2.18 6.72 -26.32 -0.18 -2.36 16 7 C -0.11 -1.53 5.80 -24.69 -0.14 -1.67 16 8 C -0.06 -0.91 2.00 -88.90 -0.18 -1.09 16 9 H 0.09 1.46 7.60 -51.93 -0.39 1.07 16 10 C -0.12 -2.05 3.54 -27.88 -0.10 -2.15 16 11 C 0.45 10.20 7.45 -10.98 -0.08 10.12 16 12 O -0.59 -15.17 14.46 5.55 0.08 -15.09 16 13 N -0.45 -11.17 3.02 -122.19 -0.37 -11.54 16 14 C 0.11 2.41 8.57 59.85 0.51 2.92 16 15 C -0.31 -8.41 9.31 -14.93 -0.14 -8.55 16 16 H 0.10 2.85 7.39 -52.49 -0.39 2.47 16 17 C 0.03 0.77 5.05 -17.47 -0.09 0.68 16 18 N -0.88 -23.29 10.71 55.50 0.59 -22.70 16 19 Si 0.92 20.54 29.58 -169.99 -5.03 15.51 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.49 7.37 -51.93 -0.38 1.11 16 29 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 30 H 0.08 1.15 7.28 -51.93 -0.38 0.77 16 31 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.06 1.37 7.44 -51.93 -0.39 0.98 16 33 H 0.03 0.50 6.28 -51.93 -0.33 0.17 16 34 H 0.06 1.46 7.19 -51.93 -0.37 1.09 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 288.25 15.07 4.34 4.34 Total: -1.00 -30.50 288.25 -5.92 -36.42 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.12 Total: 0.91 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.53 Total: -0.71 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.23 Total: -34.24 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.19 Total: -22.22 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.50 -5.92 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.161 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds