Wall clock time and date at job start Sun Mar 29 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.99884 * 2 1 4 4 C 1.51448 * 109.98736 * 121.28717 * 2 1 3 5 5 O 1.20761 * 126.34386 * 298.97743 * 4 2 1 6 6 C 1.51842 * 107.31594 * 118.99390 * 4 2 1 7 7 C 1.54890 * 104.43633 * 23.79149 * 6 4 2 8 8 C 1.54284 * 109.98788 * 238.70933 * 2 1 3 9 9 H 1.08997 * 110.56374 * 336.24098 * 8 2 1 10 10 C 1.53000 * 110.56872 * 98.95889 * 8 2 1 11 11 C 1.50706 * 109.46674 * 185.00126 * 10 8 2 12 12 O 1.21293 * 120.00001 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99712 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00039 * 359.97438 * 13 11 10 15 15 C 1.37102 * 119.99735 * 180.02562 * 13 11 10 16 16 H 1.07995 * 120.00129 * 339.69961 * 15 13 11 17 17 C 1.38952 * 119.99578 * 159.70652 * 15 13 11 18 18 N 1.31409 * 120.00368 * 344.32873 * 17 15 13 19 19 Si 1.86802 * 119.99507 * 164.32820 * 17 15 13 20 20 H 1.48503 * 109.47216 * 265.41172 * 19 17 15 21 21 H 1.48497 * 109.47184 * 145.41054 * 19 17 15 22 22 H 1.48500 * 109.47245 * 25.41150 * 19 17 15 23 23 H 1.08997 * 109.46857 * 181.29248 * 1 2 3 24 24 H 1.08995 * 109.47247 * 301.29202 * 1 2 3 25 25 H 1.09006 * 109.47177 * 61.29282 * 1 2 3 26 26 H 1.09000 * 110.44240 * 142.53273 * 6 4 2 27 27 H 1.09002 * 110.44358 * 264.93308 * 6 4 2 28 28 H 1.09000 * 110.83916 * 204.16328 * 7 6 4 29 29 H 1.09000 * 110.83240 * 80.58356 * 7 6 4 30 30 H 1.08994 * 109.47253 * 65.00305 * 10 8 2 31 31 H 1.09003 * 109.47182 * 305.00037 * 10 8 2 32 32 H 1.09005 * 109.47000 * 265.54525 * 14 13 11 33 33 H 1.09001 * 109.46899 * 25.54560 * 14 13 11 34 34 H 1.08996 * 109.47041 * 145.54649 * 14 13 11 35 35 H 0.96998 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0476 -0.7391 1.2163 5 8 1.8494 -0.4449 2.3706 6 6 2.8624 -1.9185 0.7155 7 6 3.3052 -1.5045 -0.7098 8 6 2.0573 -0.7531 -1.2390 9 1 1.3104 -1.4571 -1.6057 10 6 2.4507 0.2334 -2.3404 11 6 2.8451 -0.5285 -3.5795 12 8 2.8140 -1.7410 -3.5815 13 7 3.2322 0.1376 -4.6854 14 6 3.2692 1.6022 -4.6831 15 6 3.5905 -0.5554 -5.8128 16 1 3.8806 -1.5931 -5.7394 17 6 3.5804 0.0774 -7.0498 18 7 2.9478 1.2195 -7.1985 19 14 4.4662 -0.6956 -8.5015 20 1 5.8333 -0.1254 -8.6079 21 1 3.7129 -0.4116 -9.7493 22 1 4.5566 -2.1642 -8.3013 23 1 -0.3633 -1.0274 0.0232 24 1 -0.3633 0.5337 0.8781 25 1 -0.3634 0.4936 -0.9014 26 1 3.7320 -2.0785 1.3529 27 1 2.2477 -2.8179 0.6790 28 1 3.5170 -2.3823 -1.3204 29 1 4.1692 -0.8412 -0.6700 30 1 3.2920 0.8384 -2.0028 31 1 1.6043 0.8819 -2.5666 32 1 2.3323 1.9899 -5.0832 33 1 3.4044 1.9606 -3.6626 34 1 4.0982 1.9457 -5.3017 35 1 2.9405 1.6611 -8.0621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279672588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:22 Heat of formation + Delta-G solvation = -101.830582 kcal Electronic energy + Delta-G solvation = -17357.192922 eV Core-core repulsion = 14547.148775 eV Total energy + Delta-G solvation = -2810.044147 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19643 -40.12507 -37.71118 -36.45045 -33.65004 -32.40977 -31.49955 -28.18707 -26.74958 -25.60910 -25.11866 -21.87823 -20.33038 -20.01527 -18.81057 -17.77959 -17.11770 -16.71152 -16.39639 -16.07617 -15.74623 -15.42669 -14.81094 -14.59172 -14.17878 -14.01540 -13.58053 -13.28464 -13.18610 -13.14641 -12.99767 -12.67921 -12.62058 -12.36834 -12.13964 -12.11741 -11.80297 -11.55056 -11.44269 -10.97842 -10.43776 -10.13342 -9.63236 -8.29476 -5.91283 0.91635 1.38349 1.42629 1.54530 2.12745 2.30646 3.09126 3.13691 3.17808 3.57326 3.76035 3.90764 4.22399 4.26550 4.33612 4.40244 4.53536 4.54144 4.61601 4.78843 4.88066 4.93002 5.00769 5.06935 5.07253 5.11939 5.26458 5.35738 5.44412 5.49551 5.50310 6.14642 6.48607 6.54173 7.23697 7.57215 8.13084 8.72203 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050187 B = 0.005402 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.776602 B = 5182.329483 C = 5469.152738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 H 0.119 0.881 4 C 0.381 3.619 5 O -0.482 6.482 6 C -0.175 4.175 7 C -0.109 4.109 8 C -0.060 4.060 9 H 0.074 0.926 10 C -0.113 4.113 11 C 0.439 3.561 12 O -0.626 6.626 13 N -0.470 5.470 14 C 0.121 3.879 15 C -0.342 4.342 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.898 5.898 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 1.581 10.852 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 H 0.136 0.864 4 C 0.259 3.741 5 O -0.357 6.357 6 C -0.213 4.213 7 C -0.147 4.147 8 C -0.079 4.079 9 H 0.092 0.908 10 C -0.152 4.152 11 C 0.230 3.770 12 O -0.513 6.513 13 N -0.190 5.190 14 C -0.022 4.022 15 C -0.470 4.470 16 H 0.089 0.911 17 C -0.205 4.205 18 N -0.537 5.537 19 Si 0.809 3.191 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.201 1.201 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.230 1.320 11.279 11.423 hybrid contribution 0.369 -0.324 -1.243 1.336 sum -0.861 0.996 10.036 10.122 Atomic orbital electron populations 1.21683 0.91794 1.02697 1.03202 1.22326 0.98592 1.01842 0.93506 0.86362 1.25219 0.75205 0.85109 0.88542 1.90377 1.53481 1.68958 1.22925 1.22905 1.01728 0.98788 0.97842 1.22418 0.97389 1.00948 0.93945 1.21603 0.97928 0.96106 0.92246 0.90775 1.21594 1.03246 0.98440 0.91970 1.21090 0.81361 0.88184 0.86400 1.90464 1.59547 1.15991 1.85300 1.43918 1.57448 1.06761 1.10857 1.21440 1.01803 0.79563 0.99432 1.19602 1.44381 0.97156 0.85862 0.91057 1.25997 0.96955 0.97052 1.00515 1.70089 1.39555 1.18174 1.25860 0.85049 0.78498 0.78344 0.77244 1.19247 1.20159 1.20066 0.92362 0.91661 0.90621 0.87967 0.86856 0.91500 0.90658 0.87911 0.88458 0.93555 0.90792 0.93642 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.08 71.98 0.65 -2.10 16 2 C -0.14 -3.16 3.01 -10.87 -0.03 -3.20 16 3 H 0.12 2.29 7.83 -2.38 -0.02 2.27 16 4 C 0.38 9.19 7.18 29.71 0.21 9.41 16 5 O -0.48 -14.26 17.99 -1.45 -0.03 -14.29 16 6 C -0.18 -3.80 6.72 30.86 0.21 -3.59 16 7 C -0.11 -2.92 5.80 31.92 0.19 -2.73 16 8 C -0.06 -1.64 2.00 -9.68 -0.02 -1.66 16 9 H 0.07 2.32 7.60 -2.39 -0.02 2.30 16 10 C -0.11 -3.50 3.54 29.85 0.11 -3.39 16 11 C 0.44 20.01 7.45 87.66 0.65 20.66 16 12 O -0.63 -32.90 14.46 -3.07 -0.04 -32.95 16 13 N -0.47 -23.49 3.02 -658.87 -1.99 -25.48 16 14 C 0.12 5.11 8.57 127.77 1.10 6.20 16 15 C -0.34 -19.17 9.31 84.04 0.78 -18.39 16 16 H 0.07 4.29 7.39 -2.91 -0.02 4.27 16 17 C 0.00 -0.20 5.05 84.93 0.43 0.23 16 18 N -0.90 -47.27 10.71 21.66 0.23 -47.04 16 19 Si 0.98 42.23 29.58 68.60 2.03 44.26 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.15 7.37 -2.39 -0.02 2.14 16 29 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 30 H 0.10 2.70 7.28 -2.39 -0.02 2.68 16 31 H 0.10 2.73 8.11 -2.39 -0.02 2.71 16 32 H 0.05 2.06 7.44 -2.38 -0.02 2.05 16 33 H 0.07 2.39 6.28 -2.39 -0.01 2.37 16 34 H 0.04 2.05 7.19 -2.39 -0.02 2.04 16 35 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -66.56 288.25 5.55 -61.02 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.07 Total: 13.04 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.27 Total: 1.44 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.76 Total: -72.52 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.07 Total: -47.24 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -66.56 5.55 -61.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279672588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.811 kcal (2) G-P(sol) polarization free energy of solvation -66.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds