Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47245 * 2 1 4 4 C 1.46502 * 119.99947 * 83.20210 * 3 2 1 5 5 C 1.50694 * 109.47432 * 270.00466 * 4 3 2 6 6 H 1.07994 * 120.00239 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99951 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46817 * 59.99634 * 9 7 5 11 11 H 1.48499 * 109.46955 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46584 * 300.00000 * 9 7 5 13 13 C 1.34777 * 120.00308 * 263.21325 * 3 2 1 14 14 O 1.21283 * 120.00280 * 175.21957 * 13 3 2 15 15 C 1.50697 * 119.99679 * 355.21106 * 13 3 2 16 16 C 1.50703 * 115.55301 * 283.15775 * 15 13 3 17 17 C 1.50701 * 120.00228 * 293.64786 * 16 15 13 18 18 O 1.20762 * 119.99806 * 113.64006 * 16 15 13 19 19 C 1.52999 * 117.49943 * 137.45349 * 15 13 3 20 20 C 1.52998 * 117.49819 * 68.82992 * 15 13 3 21 21 H 1.08995 * 109.47052 * 293.60415 * 1 2 3 22 22 H 1.08995 * 109.46957 * 53.61117 * 1 2 3 23 23 H 1.09001 * 109.46751 * 173.60954 * 1 2 3 24 24 H 1.09000 * 109.47329 * 239.99831 * 2 1 3 25 25 H 1.09002 * 109.47056 * 120.00002 * 2 1 3 26 26 H 1.08999 * 109.47201 * 150.00111 * 4 3 2 27 27 H 1.09006 * 109.46763 * 30.00846 * 4 3 2 28 28 H 0.97000 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46539 * 4.12558 * 17 16 15 30 30 H 1.08998 * 109.46803 * 124.12248 * 17 16 15 31 31 H 1.08996 * 109.46922 * 244.12113 * 17 16 15 32 32 H 1.09007 * 117.49826 * 359.97438 * 19 15 13 33 33 H 1.09001 * 117.50027 * 145.01980 * 19 15 13 34 34 H 1.08995 * 117.50111 * 214.97353 * 20 15 13 35 35 H 1.08992 * 117.49990 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1210 2.1218 1.2598 5 6 0.8260 2.8460 1.5237 6 1 0.0085 2.7633 0.8230 7 6 0.6850 3.6143 2.6599 8 7 1.6803 3.7147 3.5136 9 14 -0.9205 4.5114 2.9875 10 1 -2.0278 3.5264 3.0806 11 1 -0.8167 5.2612 4.2651 12 1 -1.1931 5.4592 1.8773 13 6 2.3731 1.9706 -1.1590 14 8 2.6946 3.1400 -1.1711 15 6 2.3704 1.1765 -2.4398 16 6 3.5357 0.2393 -2.6260 17 6 4.9271 0.7919 -2.7983 18 8 3.3545 -0.9546 -2.6370 19 6 1.8000 1.8519 -3.6885 20 6 1.0144 0.7368 -2.9955 21 1 -0.3633 0.4115 0.9416 22 1 -0.3633 0.6096 -0.8272 23 1 -0.3633 -1.0213 -0.1144 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.9340 2.8446 1.1912 27 1 2.3210 1.4263 2.0749 28 1 1.5813 4.2555 4.3128 29 1 4.9036 1.8760 -2.6880 30 1 5.5843 0.3638 -2.0414 31 1 5.2996 0.5354 -3.7900 32 1 1.4263 2.8706 -3.5836 33 1 2.2677 1.6186 -4.6450 34 1 0.9652 -0.2301 -3.4961 35 1 0.1243 1.0222 -2.4350 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294610972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -46.657287 kcal Electronic energy + Delta-G solvation = -17866.712502 eV Core-core repulsion = 15059.060849 eV Total energy + Delta-G solvation = -2807.651654 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44837 -38.49306 -35.87411 -35.29153 -32.67368 -30.32721 -29.93346 -27.58954 -24.81993 -22.94422 -22.67160 -22.35177 -20.25317 -17.84676 -16.96634 -16.46237 -15.73799 -15.56249 -14.94121 -14.72680 -14.28941 -13.94992 -13.77413 -13.10871 -12.86602 -12.31125 -12.19853 -12.17593 -12.12381 -11.72177 -11.37683 -11.20730 -11.04820 -10.80191 -10.62373 -10.55880 -10.22609 -10.07467 -9.65422 -9.60878 -8.96338 -8.43410 -7.71548 -6.04707 -4.08639 1.81503 3.17897 3.31328 3.35767 3.38606 3.52014 3.82843 4.16471 4.43481 4.80111 4.86185 5.01095 5.08186 5.29565 5.40002 5.45682 5.51801 5.60700 5.70642 5.78721 5.87430 5.94720 6.00961 6.12761 6.23926 6.44316 6.84894 7.03246 7.37084 7.42087 7.51437 7.91021 8.22136 8.35842 8.85930 9.01616 9.55699 11.03602 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.007299 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.081435 B = 3835.401327 C = 3924.340849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.548 3.452 14 O -0.528 6.528 15 C -0.218 4.218 16 C 0.407 3.593 17 C -0.200 4.200 18 O -0.452 6.452 19 C -0.129 4.129 20 C -0.148 4.148 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -7.446 -11.905 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.332 3.668 14 O -0.404 6.404 15 C -0.223 4.223 16 C 0.282 3.718 17 C -0.257 4.257 18 O -0.325 6.325 19 C -0.166 4.166 20 C -0.185 4.185 21 H 0.092 0.908 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.525 -7.378 -11.683 13.902 hybrid contribution -0.906 0.584 0.394 1.148 sum 0.619 -6.794 -11.289 13.190 Atomic orbital electron populations 1.22246 0.96018 1.00574 1.03590 1.21522 0.95007 0.83334 1.02154 1.48258 1.61808 1.13551 1.08268 1.19332 0.98182 0.91569 0.78179 1.21368 0.99208 1.29159 1.06279 0.92323 1.24933 0.96818 0.96382 0.95995 1.69915 1.31236 1.40346 1.11973 0.86582 0.83588 0.79896 0.77499 1.20266 1.21195 1.20215 1.18767 0.78740 0.86448 0.82858 1.90688 1.48797 1.15630 1.85334 1.22130 0.97582 1.04777 0.97788 1.23520 0.90770 0.87977 0.69576 1.22215 0.94779 1.04463 1.04281 1.90378 1.87324 1.17878 1.36906 1.22989 1.01132 0.99220 0.93259 1.23225 0.93360 0.99733 1.02151 0.90790 0.92805 0.92897 0.90831 0.91219 0.93970 0.94862 0.92679 0.89151 0.88783 0.88748 0.87058 0.88017 0.87617 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.64 37.16 0.36 -2.39 16 2 C 0.10 1.84 5.75 -4.04 -0.02 1.81 16 3 N -0.59 -12.63 2.47 -175.06 -0.43 -13.06 16 4 C 0.25 6.40 5.16 -5.20 -0.03 6.37 16 5 C -0.52 -14.54 8.59 -34.44 -0.30 -14.83 16 6 H 0.06 1.63 7.69 -52.49 -0.40 1.22 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.55 11.37 6.82 -10.99 -0.07 11.30 16 14 O -0.53 -12.98 16.59 5.55 0.09 -12.89 16 15 C -0.22 -3.43 0.99 -156.81 -0.15 -3.59 16 16 C 0.41 5.89 6.04 -29.03 -0.18 5.72 16 17 C -0.20 -2.34 10.31 36.01 0.37 -1.97 16 18 O -0.45 -7.21 16.33 6.00 0.10 -7.11 16 19 C -0.13 -1.67 9.83 -26.73 -0.26 -1.93 16 20 C -0.15 -1.98 8.30 -26.73 -0.22 -2.21 16 21 H 0.07 1.40 7.56 -51.93 -0.39 1.00 16 22 H 0.05 0.88 5.60 -51.93 -0.29 0.59 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.21 4.58 -51.93 -0.24 0.97 16 25 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 26 H 0.04 1.22 7.49 -51.93 -0.39 0.84 16 27 H 0.03 0.88 7.96 -51.93 -0.41 0.47 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.09 1.11 8.01 -51.93 -0.42 0.70 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 1.26 8.01 -51.93 -0.42 0.85 16 35 H 0.11 1.56 5.78 -51.93 -0.30 1.26 16 LS Contribution 296.10 15.07 4.46 4.46 Total: -1.00 -32.19 296.10 -5.59 -37.78 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.92 Total: -0.14 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.60 Total: -0.09 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.30 Total: -38.76 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.19 Total: -20.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.19 -5.59 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294610972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds