Wall clock time and date at job start Sun Mar 29 2020 22:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47245 * 2 1 4 4 C 1.46502 * 119.99947 * 83.20210 * 3 2 1 5 5 C 1.50694 * 109.47432 * 270.00466 * 4 3 2 6 6 H 1.07994 * 120.00239 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99951 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00233 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46817 * 59.99634 * 9 7 5 11 11 H 1.48499 * 109.46955 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46584 * 300.00000 * 9 7 5 13 13 C 1.34777 * 120.00308 * 263.21325 * 3 2 1 14 14 O 1.21283 * 120.00280 * 175.21957 * 13 3 2 15 15 C 1.50697 * 119.99679 * 355.21106 * 13 3 2 16 16 C 1.50703 * 115.55301 * 283.15775 * 15 13 3 17 17 C 1.50701 * 120.00228 * 293.64786 * 16 15 13 18 18 O 1.20762 * 119.99806 * 113.64006 * 16 15 13 19 19 C 1.52999 * 117.49943 * 137.45349 * 15 13 3 20 20 C 1.52998 * 117.49819 * 68.82992 * 15 13 3 21 21 H 1.08995 * 109.47052 * 293.60415 * 1 2 3 22 22 H 1.08995 * 109.46957 * 53.61117 * 1 2 3 23 23 H 1.09001 * 109.46751 * 173.60954 * 1 2 3 24 24 H 1.09000 * 109.47329 * 239.99831 * 2 1 3 25 25 H 1.09002 * 109.47056 * 120.00002 * 2 1 3 26 26 H 1.08999 * 109.47201 * 150.00111 * 4 3 2 27 27 H 1.09006 * 109.46763 * 30.00846 * 4 3 2 28 28 H 0.97000 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46539 * 4.12558 * 17 16 15 30 30 H 1.08998 * 109.46803 * 124.12248 * 17 16 15 31 31 H 1.08996 * 109.46922 * 244.12113 * 17 16 15 32 32 H 1.09007 * 117.49826 * 359.97438 * 19 15 13 33 33 H 1.09001 * 117.50027 * 145.01980 * 19 15 13 34 34 H 1.08995 * 117.50111 * 214.97353 * 20 15 13 35 35 H 1.08992 * 117.49990 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1210 2.1218 1.2598 5 6 0.8260 2.8460 1.5237 6 1 0.0085 2.7633 0.8230 7 6 0.6850 3.6143 2.6599 8 7 1.6803 3.7147 3.5136 9 14 -0.9205 4.5114 2.9875 10 1 -2.0278 3.5264 3.0806 11 1 -0.8167 5.2612 4.2651 12 1 -1.1931 5.4592 1.8773 13 6 2.3731 1.9706 -1.1590 14 8 2.6946 3.1400 -1.1711 15 6 2.3704 1.1765 -2.4398 16 6 3.5357 0.2393 -2.6260 17 6 4.9271 0.7919 -2.7983 18 8 3.3545 -0.9546 -2.6370 19 6 1.8000 1.8519 -3.6885 20 6 1.0144 0.7368 -2.9955 21 1 -0.3633 0.4115 0.9416 22 1 -0.3633 0.6096 -0.8272 23 1 -0.3633 -1.0213 -0.1144 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.9340 2.8446 1.1912 27 1 2.3210 1.4263 2.0749 28 1 1.5813 4.2555 4.3128 29 1 4.9036 1.8760 -2.6880 30 1 5.5843 0.3638 -2.0414 31 1 5.2996 0.5354 -3.7900 32 1 1.4263 2.8706 -3.5836 33 1 2.2677 1.6186 -4.6450 34 1 0.9652 -0.2301 -3.4961 35 1 0.1243 1.0222 -2.4350 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294610972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:58 Heat of formation + Delta-G solvation = -67.093516 kcal Electronic energy + Delta-G solvation = -17867.598684 eV Core-core repulsion = 15059.060849 eV Total energy + Delta-G solvation = -2808.537835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78718 -39.93558 -37.22842 -36.92938 -34.78613 -31.62022 -31.25346 -29.52205 -26.36960 -24.51771 -24.30065 -23.43803 -21.69148 -19.28100 -18.72189 -18.21823 -17.35096 -16.90786 -16.49191 -16.06444 -15.74503 -15.51726 -15.08299 -14.61506 -14.31908 -14.18223 -13.75042 -13.34651 -13.31238 -13.15114 -13.01672 -12.84651 -12.65072 -12.46185 -12.20231 -12.00991 -11.79328 -11.68544 -11.47691 -10.84870 -10.62883 -10.57378 -9.53522 -8.21889 -6.34754 0.66929 1.36250 1.39961 1.46994 1.62279 2.12818 2.39552 2.58547 2.95761 3.08052 3.47117 3.78320 3.78495 4.04229 4.12199 4.39041 4.45431 4.52301 4.56212 4.61566 4.66407 4.82751 4.90124 4.99671 5.01352 5.06241 5.12701 5.18841 5.47696 5.57179 5.80114 6.05515 6.27879 6.64654 6.73821 7.23172 7.39136 8.85675 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.007299 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.081435 B = 3835.401327 C = 3924.340849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.595 5.595 4 C 0.261 3.739 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.544 3.456 14 O -0.577 6.577 15 C -0.237 4.237 16 C 0.411 3.589 17 C -0.198 4.198 18 O -0.465 6.465 19 C -0.112 4.112 20 C -0.135 4.135 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.001 0.999 27 H 0.022 0.978 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -8.619 -13.637 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.021 4.021 3 N -0.325 5.325 4 C 0.140 3.860 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.331 3.669 14 O -0.457 6.457 15 C -0.242 4.242 16 C 0.287 3.713 17 C -0.254 4.254 18 O -0.339 6.339 19 C -0.149 4.149 20 C -0.172 4.172 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.019 0.981 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.501 -8.591 -13.432 15.952 hybrid contribution -0.550 0.933 0.920 1.421 sum -0.049 -7.658 -12.512 14.669 Atomic orbital electron populations 1.22182 0.94799 1.02688 1.02081 1.21733 0.95972 0.81239 1.03130 1.48262 1.62209 1.14766 1.07251 1.18810 0.96231 0.90779 0.80157 1.21599 0.99612 1.29491 1.06342 0.92575 1.25827 1.00389 0.97159 0.95775 1.70037 1.33288 1.41118 1.12467 0.85524 0.79563 0.78747 0.77342 1.18637 1.20448 1.20259 1.19539 0.77049 0.86261 0.84070 1.90649 1.50624 1.18077 1.86367 1.22010 1.00000 1.06071 0.96078 1.23688 0.91219 0.87444 0.68908 1.22251 0.93181 1.03619 1.06392 1.90375 1.87487 1.18199 1.37862 1.23152 0.99857 0.98489 0.93449 1.23323 0.91554 1.01010 1.01330 0.93611 0.92637 0.89245 0.88881 0.91109 0.98087 0.96026 0.92467 0.90194 0.88267 0.85418 0.88393 0.84368 0.85260 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 9.64 71.98 0.69 -4.36 16 2 C 0.10 3.53 5.75 86.38 0.50 4.02 16 3 N -0.59 -26.05 2.47 -826.16 -2.04 -28.09 16 4 C 0.26 14.18 5.16 85.63 0.44 14.63 16 5 C -0.53 -30.43 8.59 25.60 0.22 -30.21 16 6 H 0.06 3.17 7.69 -2.91 -0.02 3.14 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.54 22.88 6.82 87.66 0.60 23.48 16 14 O -0.58 -29.44 16.59 -3.04 -0.05 -29.49 16 15 C -0.24 -7.10 0.99 -53.67 -0.05 -7.15 16 16 C 0.41 11.02 6.04 29.10 0.18 11.19 16 17 C -0.20 -4.20 10.31 71.24 0.73 -3.47 16 18 O -0.47 -13.55 16.33 -1.45 -0.02 -13.57 16 19 C -0.11 -2.64 9.83 30.59 0.30 -2.34 16 20 C -0.14 -3.27 8.30 30.59 0.25 -3.02 16 21 H 0.04 1.70 7.56 -2.39 -0.02 1.68 16 22 H 0.05 1.73 5.60 -2.39 -0.01 1.71 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.09 2.89 4.58 -2.39 -0.01 2.88 16 25 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 26 H 0.00 0.06 7.49 -2.39 -0.02 0.05 16 27 H 0.02 1.21 7.96 -2.38 -0.02 1.19 16 28 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.13 2.56 8.01 -2.39 -0.02 2.54 16 35 H 0.10 2.66 5.78 -2.39 -0.01 2.65 16 Total: -1.00 -71.61 296.10 5.60 -66.01 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.08 Total: 10.47 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.32 Total: 3.66 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.76 Total: -84.00 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.07 Total: -43.07 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.61 5.60 -66.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294610972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.085 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds