Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99865 * 2 1 4 4 C 1.52999 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47557 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46809 * 55.00208 * 5 4 3 7 7 N 1.46895 * 109.46977 * 295.00471 * 5 4 3 8 8 C 1.46901 * 111.00427 * 154.99578 * 7 5 4 9 9 C 1.50701 * 109.47533 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00014 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00196 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47213 * 59.99977 * 13 11 9 15 15 H 1.48503 * 109.47162 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47229 * 299.99664 * 13 11 9 17 17 C 1.50696 * 109.47388 * 174.99952 * 5 4 3 18 18 C 1.34512 * 125.79261 * 259.99868 * 17 5 4 19 19 C 1.41379 * 106.84086 * 180.02562 * 18 17 5 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46982 * 299.99708 * 1 2 3 24 24 H 1.09004 * 109.47160 * 59.99832 * 1 2 3 25 25 H 1.09001 * 109.46810 * 60.00722 * 3 2 1 26 26 H 1.09001 * 109.47672 * 300.00181 * 3 2 1 27 27 H 1.09000 * 109.46986 * 59.99995 * 4 3 2 28 28 H 1.09008 * 109.47273 * 300.00430 * 4 3 2 29 29 H 1.00898 * 111.00422 * 31.04090 * 7 5 4 30 30 H 1.09001 * 109.47192 * 300.00109 * 8 7 5 31 31 H 1.09002 * 109.46764 * 59.99967 * 8 7 5 32 32 H 0.96998 * 120.00037 * 179.97438 * 12 11 9 33 33 H 1.07996 * 126.57559 * 359.97438 * 18 17 5 34 34 H 1.08007 * 126.57604 * 180.02562 * 19 18 17 35 35 H 1.08004 * 125.79431 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1578 2.5825 0.0013 6 1 3.7667 3.1539 0.8431 7 7 3.8227 3.2682 -1.2538 8 6 3.8590 4.7268 -1.0829 9 6 3.5114 5.3945 -2.3884 10 1 3.2864 4.7952 -3.2583 11 6 3.4816 6.7703 -2.4726 12 7 3.7560 7.5001 -1.4134 13 14 3.0514 7.5979 -4.0910 14 1 1.6892 7.1831 -4.5124 15 1 3.0880 9.0724 -3.9181 16 1 4.0345 7.1963 -5.1291 17 6 5.6550 2.4657 0.1258 18 6 6.3658 2.6313 1.2557 19 6 7.7242 2.4329 0.9178 20 6 7.7624 2.1584 -0.3984 21 8 6.5062 2.1794 -0.8729 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8574 0.6437 -0.8891 28 1 3.8568 0.6439 0.8909 29 1 2.9247 2.9672 -1.6018 30 1 3.1379 5.0213 -0.3204 31 1 4.8590 5.0316 -0.7743 32 1 3.7354 8.4680 -1.4728 33 1 5.9740 2.8708 2.2331 34 1 8.5692 2.4906 1.5881 35 1 8.6523 1.9548 -0.9757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299164947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -35.274205 kcal Electronic energy + Delta-G solvation = -16976.959000 eV Core-core repulsion = 14169.800954 eV Total energy + Delta-G solvation = -2807.158046 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04322 -38.12156 -36.25793 -33.06744 -32.43787 -30.94416 -29.38716 -26.98130 -25.98513 -24.27750 -21.78429 -21.52274 -21.12361 -19.58555 -17.01781 -16.68767 -16.04296 -15.98715 -15.48014 -14.96996 -14.73992 -14.41498 -14.03483 -13.71653 -12.89847 -12.49289 -12.35173 -12.14599 -12.09928 -11.84467 -11.46145 -11.28995 -10.97800 -10.91548 -10.67239 -10.63464 -9.94859 -9.62611 -9.44815 -9.22183 -8.51410 -7.99095 -7.47171 -6.04949 -4.07300 2.23465 3.03149 3.32460 3.36460 3.39731 3.48800 3.82728 4.41003 4.87592 5.04686 5.17372 5.26403 5.31081 5.32477 5.37797 5.45173 5.48613 5.54653 5.62073 5.66846 5.76364 6.13824 6.20759 6.30791 6.35844 6.54309 6.90070 7.16160 7.17145 7.33466 7.63954 7.76877 8.07814 8.30439 8.51105 9.00815 9.57465 11.06100 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.007854 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.960926 B = 3564.381395 C = 5156.920987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.058 3.942 4 C -0.116 4.116 5 C 0.163 3.837 6 H 0.069 0.931 7 N -0.681 5.681 8 C 0.195 3.805 9 C -0.516 4.516 10 H 0.062 0.938 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.900 3.100 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.035 3.965 18 C -0.230 4.230 19 C -0.217 4.217 20 C -0.055 4.055 21 O -0.151 6.151 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.335 0.665 30 H -0.011 1.011 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -12.288 5.077 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.018 4.018 4 C -0.154 4.154 5 C 0.052 3.948 6 H 0.087 0.913 7 N -0.314 5.314 8 C 0.069 3.931 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.018 4.018 18 C -0.249 4.249 19 C -0.236 4.236 20 C -0.123 4.123 21 O -0.045 6.045 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.006 0.994 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.365 -12.338 4.578 13.165 hybrid contribution -0.927 1.158 -0.040 1.484 sum -0.562 -11.180 4.538 12.079 Atomic orbital electron populations 1.22729 0.81189 1.02429 1.00181 1.87841 1.19598 1.28229 1.95483 1.22604 0.93958 0.84477 1.00776 1.21664 0.92795 0.96766 1.04159 1.19878 0.85681 0.94163 0.95117 0.91320 1.60681 1.36416 1.09718 1.24618 1.19629 0.96694 0.80206 0.96602 1.21113 1.46847 0.91156 0.96313 0.91936 1.24978 0.95388 0.97362 0.96738 1.69953 1.49162 1.05640 1.28865 0.86538 0.78949 0.78064 0.83715 1.20251 1.21310 1.20113 1.22440 0.92355 1.01641 0.85344 1.21480 0.93328 1.10786 0.99334 1.21676 0.97378 1.08516 0.96051 1.23951 0.86349 1.07123 0.94889 1.84117 1.15509 1.67785 1.37108 0.89856 0.94171 0.93862 0.93204 0.92400 0.89859 0.90600 0.84505 0.99361 0.95225 0.92815 0.84085 0.84121 0.78783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.49 10.70 -35.23 -0.38 -5.87 16 3 C 0.06 0.82 5.77 37.16 0.21 1.04 16 4 C -0.12 -1.74 5.16 -26.73 -0.14 -1.88 16 5 C 0.16 2.93 2.50 -68.87 -0.17 2.76 16 6 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 7 N -0.68 -14.61 6.28 -109.22 -0.69 -15.29 16 8 C 0.19 5.12 5.23 -4.97 -0.03 5.09 16 9 C -0.52 -14.66 9.32 -34.44 -0.32 -14.98 16 10 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.03 0.65 5.92 -35.63 -0.21 0.44 16 18 C -0.23 -3.89 10.80 -39.70 -0.43 -4.32 16 19 C -0.22 -3.33 10.91 -39.70 -0.43 -3.77 16 20 C -0.05 -0.86 12.09 29.41 0.36 -0.50 16 21 O -0.15 -2.92 10.64 5.71 0.06 -2.86 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.84 6.43 -51.93 -0.33 0.50 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.34 6.68 6.46 -39.29 -0.25 6.43 16 30 H -0.01 -0.31 8.06 -51.93 -0.42 -0.73 16 31 H 0.03 0.86 8.00 -51.93 -0.42 0.45 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.20 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -32.07 301.82 -6.06 -38.13 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.18 Total: 3.89 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.14 Total: -13.15 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.05 Total: -41.45 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.32 Total: -8.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.07 -6.06 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299164947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.852 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds