Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99865 * 2 1 4 4 C 1.52999 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47557 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46809 * 55.00208 * 5 4 3 7 7 N 1.46895 * 109.46977 * 295.00471 * 5 4 3 8 8 C 1.46901 * 111.00427 * 154.99578 * 7 5 4 9 9 C 1.50701 * 109.47533 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00014 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00196 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47213 * 59.99977 * 13 11 9 15 15 H 1.48503 * 109.47162 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47229 * 299.99664 * 13 11 9 17 17 C 1.50696 * 109.47388 * 174.99952 * 5 4 3 18 18 C 1.34512 * 125.79261 * 259.99868 * 17 5 4 19 19 C 1.41379 * 106.84086 * 180.02562 * 18 17 5 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46982 * 299.99708 * 1 2 3 24 24 H 1.09004 * 109.47160 * 59.99832 * 1 2 3 25 25 H 1.09001 * 109.46810 * 60.00722 * 3 2 1 26 26 H 1.09001 * 109.47672 * 300.00181 * 3 2 1 27 27 H 1.09000 * 109.46986 * 59.99995 * 4 3 2 28 28 H 1.09008 * 109.47273 * 300.00430 * 4 3 2 29 29 H 1.00898 * 111.00422 * 31.04090 * 7 5 4 30 30 H 1.09001 * 109.47192 * 300.00109 * 8 7 5 31 31 H 1.09002 * 109.46764 * 59.99967 * 8 7 5 32 32 H 0.96998 * 120.00037 * 179.97438 * 12 11 9 33 33 H 1.07996 * 126.57559 * 359.97438 * 18 17 5 34 34 H 1.08007 * 126.57604 * 180.02562 * 19 18 17 35 35 H 1.08004 * 125.79431 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1578 2.5825 0.0013 6 1 3.7667 3.1539 0.8431 7 7 3.8227 3.2682 -1.2538 8 6 3.8590 4.7268 -1.0829 9 6 3.5114 5.3945 -2.3884 10 1 3.2864 4.7952 -3.2583 11 6 3.4816 6.7703 -2.4726 12 7 3.7560 7.5001 -1.4134 13 14 3.0514 7.5979 -4.0910 14 1 1.6892 7.1831 -4.5124 15 1 3.0880 9.0724 -3.9181 16 1 4.0345 7.1963 -5.1291 17 6 5.6550 2.4657 0.1258 18 6 6.3658 2.6313 1.2557 19 6 7.7242 2.4329 0.9178 20 6 7.7624 2.1584 -0.3984 21 8 6.5062 2.1794 -0.8729 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8574 0.6437 -0.8891 28 1 3.8568 0.6439 0.8909 29 1 2.9247 2.9672 -1.6018 30 1 3.1379 5.0213 -0.3204 31 1 4.8590 5.0316 -0.7743 32 1 3.7354 8.4680 -1.4728 33 1 5.9740 2.8708 2.2331 34 1 8.5692 2.4906 1.5881 35 1 8.6523 1.9548 -0.9757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299164947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = -57.766955 kcal Electronic energy + Delta-G solvation = -16977.934359 eV Core-core repulsion = 14169.800954 eV Total energy + Delta-G solvation = -2808.133405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.36120 -39.28119 -37.73344 -35.07667 -33.77872 -32.62948 -30.65131 -28.55628 -27.33811 -25.62061 -23.77936 -22.77275 -22.45860 -20.94908 -18.66476 -18.24394 -17.39990 -17.16952 -16.83256 -16.60148 -16.13589 -15.94010 -15.49532 -15.10062 -14.43245 -13.89373 -13.79081 -13.61451 -13.59056 -13.41805 -12.94571 -12.69360 -12.53836 -12.41538 -12.13292 -12.07515 -11.97383 -11.33068 -10.74048 -10.68090 -10.64955 -9.29997 -9.27069 -8.23949 -6.35371 0.92088 1.40013 1.43679 1.51636 1.77715 2.24775 2.38733 2.76496 3.09456 3.38596 3.77036 3.97185 4.13848 4.18540 4.24826 4.32784 4.37416 4.45402 4.54163 4.58951 4.84747 4.90760 4.95571 5.01447 5.06179 5.12664 5.22365 5.28101 5.56886 5.70644 5.97693 6.16221 6.28188 6.46708 6.63890 6.84402 7.35356 8.87440 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.007854 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.960926 B = 3564.381395 C = 5156.920987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.063 3.937 4 C -0.102 4.102 5 C 0.165 3.835 6 H 0.067 0.933 7 N -0.682 5.682 8 C 0.215 3.785 9 C -0.538 4.538 10 H 0.064 0.936 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.003 4.003 18 C -0.233 4.233 19 C -0.222 4.222 20 C -0.058 4.058 21 O -0.181 6.181 22 H 0.104 0.896 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.343 0.657 30 H -0.031 1.031 31 H -0.007 1.007 32 H 0.266 0.734 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -12.890 4.706 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.014 4.014 4 C -0.140 4.140 5 C 0.054 3.946 6 H 0.085 0.915 7 N -0.316 5.316 8 C 0.088 3.912 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.796 3.204 14 H -0.188 1.188 15 H -0.207 1.207 16 H -0.196 1.196 17 C -0.054 4.054 18 C -0.253 4.253 19 C -0.241 4.241 20 C -0.125 4.125 21 O -0.076 6.076 22 H 0.122 0.878 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.164 0.836 30 H -0.013 1.013 31 H 0.011 0.989 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.190 0.810 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.353 -12.970 4.214 13.642 hybrid contribution -0.878 1.286 0.141 1.563 sum -0.525 -11.684 4.355 12.480 Atomic orbital electron populations 1.22969 0.79376 1.04069 1.00841 1.87807 1.21594 1.27833 1.95594 1.22496 0.93256 0.84846 1.00814 1.21515 0.93420 0.94715 1.04367 1.19922 0.86197 0.95274 0.93194 0.91546 1.60500 1.36965 1.07137 1.27013 1.19184 0.93747 0.83019 0.95260 1.21490 1.47128 0.91902 0.97086 0.91768 1.25928 0.94944 0.98033 1.00584 1.70083 1.49919 1.06038 1.31198 0.85405 0.79216 0.76944 0.78857 1.18812 1.20688 1.19598 1.22592 0.92686 1.04010 0.86118 1.21862 0.94273 1.09584 0.99548 1.22087 0.97534 1.07929 0.96548 1.24830 0.86145 1.05829 0.95720 1.84077 1.16964 1.68545 1.38021 0.87804 0.93141 0.93574 0.92369 0.93161 0.90726 0.89183 0.83638 1.01290 0.98902 0.92569 0.82605 0.81012 0.75026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.96 10.70 -148.98 -1.59 -12.56 16 3 C 0.06 1.73 5.77 71.98 0.42 2.14 16 4 C -0.10 -3.05 5.16 30.59 0.16 -2.89 16 5 C 0.16 6.03 2.50 44.17 0.11 6.14 16 6 H 0.07 2.44 7.79 -2.39 -0.02 2.42 16 7 N -0.68 -29.99 6.28 -499.47 -3.14 -33.12 16 8 C 0.22 11.69 5.23 85.56 0.45 12.14 16 9 C -0.54 -31.03 9.32 25.60 0.24 -30.79 16 10 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 13 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 14 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C 0.00 -0.10 5.92 24.83 0.15 0.05 16 18 C -0.23 -7.77 10.80 22.19 0.24 -7.53 16 19 C -0.22 -6.44 10.91 22.19 0.24 -6.20 16 20 C -0.06 -1.73 12.09 66.97 0.81 -0.92 16 21 O -0.18 -6.98 10.64 -2.47 -0.03 -7.01 16 22 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.45 6.43 -2.39 -0.02 1.43 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.34 13.93 6.46 -89.70 -0.58 13.35 16 30 H -0.03 -1.73 8.06 -2.39 -0.02 -1.75 16 31 H -0.01 -0.44 8.00 -2.39 -0.02 -0.46 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.23 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -69.27 301.82 2.56 -66.71 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.49 Total: 21.34 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 4.52 Total: -25.50 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -2.85 Total: -89.53 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.62 Total: -19.56 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.27 2.56 -66.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299164947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.941 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds