Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 N 1.46910 * 109.47127 * 65.00091 * 5 4 3 8 8 C 1.46900 * 111.00108 * 205.00462 * 7 5 4 9 9 C 1.50692 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00372 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00108 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99712 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46602 * 90.00505 * 13 11 9 15 15 H 1.48500 * 109.46959 * 210.00155 * 13 11 9 16 16 H 1.48497 * 109.47339 * 330.00552 * 13 11 9 17 17 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 18 18 C 1.34509 * 125.79255 * 99.99630 * 17 5 4 19 19 C 1.41376 * 106.84587 * 180.02562 * 18 17 5 20 20 C 1.34516 * 106.83863 * 359.97438 * 19 18 17 21 21 O 1.34304 * 108.42140 * 359.73924 * 20 19 18 22 22 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 1.00903 * 110.99433 * 328.95625 * 7 5 4 30 30 H 1.09001 * 109.46729 * 299.99669 * 8 7 5 31 31 H 1.08996 * 109.47288 * 59.99365 * 8 7 5 32 32 H 0.97005 * 119.99569 * 179.97438 * 12 11 9 33 33 H 1.08008 * 126.57657 * 0.03910 * 18 17 5 34 34 H 1.07996 * 126.58462 * 179.97438 * 19 18 17 35 35 H 1.08007 * 125.79200 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7669 3.1545 -0.8413 7 7 3.8228 3.2669 1.2559 8 6 3.8592 4.7256 1.0862 9 6 3.5104 5.3921 2.3919 10 1 3.2839 4.7921 3.2609 11 6 3.4804 6.7679 2.4774 12 7 3.1756 7.3495 3.6168 13 14 3.8729 7.8057 0.9745 14 1 2.6234 8.0735 0.2181 15 1 4.4761 9.0925 1.4054 16 1 4.8309 7.0762 0.1056 17 6 5.6552 2.4656 -0.1245 18 6 6.3660 2.6322 -1.2542 19 6 7.7243 2.4324 -0.9168 20 6 7.7624 2.1562 0.3992 21 8 6.5068 2.1837 0.8751 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 2.9247 2.9656 1.6035 30 1 4.8592 5.0306 0.7779 31 1 3.1381 5.0208 0.3240 32 1 3.1549 8.3175 3.6769 33 1 5.9742 2.8727 -2.2315 34 1 8.5692 2.4904 -1.5869 35 1 8.6522 1.9520 0.9763 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299164954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = -30.872534 kcal Electronic energy + Delta-G solvation = -17040.444279 eV Core-core repulsion = 14233.477104 eV Total energy + Delta-G solvation = -2806.967175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.15101 -38.18892 -36.40357 -33.04793 -32.53211 -31.21071 -29.50852 -27.28252 -26.22731 -24.36763 -21.65944 -21.43351 -21.15943 -19.71723 -17.16488 -16.90302 -16.25304 -16.04673 -15.60438 -15.04050 -14.64746 -14.61289 -14.15231 -13.66034 -12.92402 -12.71814 -12.46022 -12.39536 -12.24556 -12.11397 -11.71359 -11.38423 -11.05791 -11.02899 -10.72549 -10.42913 -9.84572 -9.66103 -9.55598 -9.31510 -8.63662 -8.10654 -7.68743 -6.08710 -4.07030 2.12656 2.91934 3.25505 3.33944 3.37701 3.38978 3.76672 4.39437 4.72326 4.93138 5.08634 5.20262 5.23997 5.25460 5.32354 5.35893 5.40171 5.46118 5.54185 5.59373 5.63902 6.04828 6.10237 6.19984 6.25863 6.43308 6.68217 6.81032 6.92697 7.11853 7.47681 7.59487 7.81528 8.19174 8.58795 8.99006 9.52722 11.04426 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.008555 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.640581 B = 3272.019818 C = 4754.364514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.058 3.942 4 C -0.116 4.116 5 C 0.161 3.839 6 H 0.069 0.931 7 N -0.671 5.671 8 C 0.164 3.836 9 C -0.516 4.516 10 H 0.080 0.920 11 C 0.070 3.930 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.030 3.970 18 C -0.230 4.230 19 C -0.218 4.218 20 C -0.051 4.051 21 O -0.149 6.149 22 H 0.084 0.916 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.342 0.658 30 H 0.028 0.972 31 H -0.018 1.018 32 H 0.264 0.736 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -12.195 -10.435 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.311 6.311 3 C -0.019 4.019 4 C -0.154 4.154 5 C 0.050 3.950 6 H 0.087 0.913 7 N -0.304 5.304 8 C 0.037 3.963 9 C -0.554 4.554 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.537 5.537 13 Si 0.702 3.298 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.022 4.022 18 C -0.250 4.250 19 C -0.238 4.238 20 C -0.120 4.120 21 O -0.043 6.043 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.046 0.954 31 H -0.001 1.001 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.783 -12.257 -9.778 15.781 hybrid contribution -0.549 1.265 -1.468 2.014 sum 1.234 -10.992 -11.247 15.775 Atomic orbital electron populations 1.22738 0.81091 1.02509 1.00214 1.87842 1.19674 1.28082 1.95481 1.22602 0.93885 0.84641 1.00771 1.21654 0.92860 0.96518 1.04374 1.19918 0.85824 0.94492 0.94799 0.91346 1.60501 1.37074 1.08326 1.24527 1.20086 0.95887 0.83167 0.97168 1.21013 1.46845 0.91636 0.95954 0.90175 1.24883 0.94708 0.97763 0.95821 1.69896 1.48924 1.10068 1.24831 0.86862 0.79065 0.80184 0.83693 1.20287 1.21033 1.19075 1.22429 0.92328 1.02010 0.85431 1.21488 0.93377 1.10817 0.99279 1.21685 0.97369 1.08600 0.96116 1.24001 0.86387 1.06729 0.94873 1.84138 1.15536 1.67763 1.36863 0.89794 0.93752 0.94200 0.93260 0.92312 0.89653 0.90462 0.83743 0.95391 1.00072 0.92603 0.84080 0.84048 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.33 10.70 -35.23 -0.38 -5.71 16 3 C 0.06 0.78 5.77 37.16 0.21 0.99 16 4 C -0.12 -1.66 5.16 -26.74 -0.14 -1.80 16 5 C 0.16 2.73 2.50 -68.86 -0.17 2.56 16 6 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 7 N -0.67 -13.85 6.28 -109.22 -0.69 -14.54 16 8 C 0.16 4.00 4.30 -4.98 -0.02 3.98 16 9 C -0.52 -14.81 9.87 -34.44 -0.34 -15.15 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 13 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 17 C 0.03 0.54 5.92 -35.63 -0.21 0.33 16 18 C -0.23 -3.65 10.80 -39.71 -0.43 -4.08 16 19 C -0.22 -3.16 10.91 -39.70 -0.43 -3.60 16 20 C -0.05 -0.76 12.09 29.42 0.36 -0.41 16 21 O -0.15 -2.77 10.64 5.69 0.06 -2.71 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.34 6.64 6.46 -39.29 -0.25 6.39 16 30 H 0.03 0.73 7.05 -51.93 -0.37 0.36 16 31 H -0.02 -0.43 7.48 -51.93 -0.39 -0.82 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.20 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -32.61 298.21 -5.71 -38.32 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.14 Total: 3.79 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.16 Total: -13.80 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.09 Total: -41.42 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.32 Total: -8.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.61 -5.71 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299164954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.444 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds