Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 N 1.46910 * 109.47127 * 65.00091 * 5 4 3 8 8 C 1.46900 * 111.00108 * 205.00462 * 7 5 4 9 9 C 1.50692 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00372 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00108 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99712 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46602 * 90.00505 * 13 11 9 15 15 H 1.48500 * 109.46959 * 210.00155 * 13 11 9 16 16 H 1.48497 * 109.47339 * 330.00552 * 13 11 9 17 17 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 18 18 C 1.34509 * 125.79255 * 99.99630 * 17 5 4 19 19 C 1.41376 * 106.84587 * 180.02562 * 18 17 5 20 20 C 1.34516 * 106.83863 * 359.97438 * 19 18 17 21 21 O 1.34304 * 108.42140 * 359.73924 * 20 19 18 22 22 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 1.00903 * 110.99433 * 328.95625 * 7 5 4 30 30 H 1.09001 * 109.46729 * 299.99669 * 8 7 5 31 31 H 1.08996 * 109.47288 * 59.99365 * 8 7 5 32 32 H 0.97005 * 119.99569 * 179.97438 * 12 11 9 33 33 H 1.08008 * 126.57657 * 0.03910 * 18 17 5 34 34 H 1.07996 * 126.58462 * 179.97438 * 19 18 17 35 35 H 1.08007 * 125.79200 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7669 3.1545 -0.8413 7 7 3.8228 3.2669 1.2559 8 6 3.8592 4.7256 1.0862 9 6 3.5104 5.3921 2.3919 10 1 3.2839 4.7921 3.2609 11 6 3.4804 6.7679 2.4774 12 7 3.1756 7.3495 3.6168 13 14 3.8729 7.8057 0.9745 14 1 2.6234 8.0735 0.2181 15 1 4.4761 9.0925 1.4054 16 1 4.8309 7.0762 0.1056 17 6 5.6552 2.4656 -0.1245 18 6 6.3660 2.6322 -1.2542 19 6 7.7243 2.4324 -0.9168 20 6 7.7624 2.1562 0.3992 21 8 6.5068 2.1837 0.8751 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 2.9247 2.9656 1.6035 30 1 4.8592 5.0306 0.7779 31 1 3.1381 5.0208 0.3240 32 1 3.1549 8.3175 3.6769 33 1 5.9742 2.8727 -2.2315 34 1 8.5692 2.4904 -1.5869 35 1 8.6522 1.9520 0.9763 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299164954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = -54.620132 kcal Electronic energy + Delta-G solvation = -17041.474052 eV Core-core repulsion = 14233.477104 eV Total energy + Delta-G solvation = -2807.996948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.36826 -39.29407 -37.78205 -35.02867 -33.79170 -32.88076 -30.67574 -28.92699 -27.38534 -25.59713 -23.37472 -22.76812 -22.45232 -20.97718 -19.03517 -18.24593 -17.48817 -17.15507 -16.84977 -16.47659 -16.16229 -15.97288 -15.58491 -15.05437 -14.58577 -14.17405 -13.90018 -13.73511 -13.60359 -13.44205 -12.98124 -12.72594 -12.43380 -12.30703 -12.15933 -12.04728 -11.81038 -11.48886 -10.84739 -10.73832 -10.64554 -9.33154 -9.29734 -8.32607 -6.37307 0.91323 1.31096 1.34709 1.45550 1.77589 2.25303 2.31361 2.76461 3.01178 3.30795 3.74737 3.97092 4.13260 4.17913 4.25013 4.31998 4.36789 4.44036 4.53885 4.58212 4.71941 4.84882 4.93801 4.95469 4.99350 5.05825 5.10900 5.27386 5.49123 5.67856 5.87342 6.16734 6.35643 6.50797 6.57917 6.71116 7.27364 8.84082 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.008555 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.640581 B = 3272.019818 C = 4754.364514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.061 3.939 4 C -0.104 4.104 5 C 0.163 3.837 6 H 0.081 0.919 7 N -0.684 5.684 8 C 0.180 3.820 9 C -0.528 4.528 10 H 0.038 0.962 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.948 3.052 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.255 1.255 17 C -0.007 4.007 18 C -0.228 4.228 19 C -0.222 4.222 20 C -0.059 4.059 21 O -0.183 6.183 22 H 0.102 0.898 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.345 0.655 30 H 0.016 0.984 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -12.370 -13.064 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C -0.016 4.016 4 C -0.142 4.142 5 C 0.053 3.947 6 H 0.098 0.902 7 N -0.318 5.318 8 C 0.052 3.948 9 C -0.567 4.567 10 H 0.056 0.944 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.771 3.229 14 H -0.184 1.184 15 H -0.206 1.206 16 H -0.179 1.179 17 C -0.058 4.058 18 C -0.247 4.247 19 C -0.241 4.241 20 C -0.126 4.126 21 O -0.078 6.078 22 H 0.121 0.879 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.034 0.966 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.190 0.810 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.373 -12.462 -12.420 17.753 hybrid contribution -0.715 1.216 -0.582 1.527 sum 1.658 -11.246 -13.002 17.270 Atomic orbital electron populations 1.22961 0.79404 1.04029 1.00839 1.87808 1.21558 1.27978 1.95599 1.22533 0.93280 0.84873 1.00930 1.21524 0.93403 0.94932 1.04339 1.20000 0.86213 0.95368 0.93102 0.90165 1.60329 1.37532 1.06534 1.27364 1.19751 0.95096 0.85170 0.94806 1.21288 1.46751 0.91948 0.96669 0.94398 1.25842 0.94379 0.99212 0.99278 1.70049 1.50338 1.10684 1.27460 0.85710 0.79664 0.78048 0.79518 1.18438 1.20585 1.17908 1.22637 0.92654 1.04377 0.86162 1.21880 0.93988 1.09325 0.99557 1.22098 0.97744 1.07833 0.96400 1.24821 0.86144 1.05824 0.95836 1.84104 1.17037 1.68617 1.38060 0.87930 0.93779 0.92907 0.91766 0.93433 0.91179 0.88890 0.83373 0.96603 0.98735 0.92286 0.82049 0.81021 0.75364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.66 10.70 -148.98 -1.59 -12.25 16 3 C 0.06 1.57 5.77 71.98 0.42 1.98 16 4 C -0.10 -2.89 5.16 30.59 0.16 -2.74 16 5 C 0.16 5.40 2.50 44.16 0.11 5.51 16 6 H 0.08 2.45 7.79 -2.39 -0.02 2.43 16 7 N -0.68 -28.43 6.28 -499.47 -3.14 -31.57 16 8 C 0.18 8.72 4.30 85.55 0.37 9.09 16 9 C -0.53 -31.04 9.87 25.60 0.25 -30.79 16 10 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 11 C 0.01 0.63 5.47 84.65 0.46 1.09 16 12 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 13 Si 0.95 44.33 27.47 68.60 1.88 46.22 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 17 C -0.01 -0.24 5.92 24.83 0.15 -0.09 16 18 C -0.23 -6.71 10.80 22.19 0.24 -6.47 16 19 C -0.22 -5.82 10.91 22.19 0.24 -5.57 16 20 C -0.06 -1.65 12.09 66.97 0.81 -0.84 16 21 O -0.18 -6.70 10.64 -2.54 -0.03 -6.73 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.32 6.43 -2.39 -0.02 1.31 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.35 13.71 6.46 -89.69 -0.58 13.13 16 30 H 0.02 0.81 7.05 -2.39 -0.02 0.79 16 31 H 0.00 -0.22 7.48 -2.39 -0.02 -0.24 16 32 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 33 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.23 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.20 298.21 2.32 -68.89 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.44 Total: 21.69 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.45 Total: -27.13 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -2.84 Total: -90.69 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -1.62 Total: -18.98 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -71.20 2.32 -68.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299164954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.266 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds