Wall clock time and date at job start Sun Mar 29 2020 22:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50700 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.29947 * 126.28712 * 90.02820 * 4 3 2 6 6 O 1.21304 * 110.24820 * 179.97438 * 5 4 3 7 7 C 1.33638 * 109.81238 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.54939 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47188 * 269.97497 * 8 7 6 10 10 C 1.36944 * 119.99770 * 90.00237 * 9 8 7 11 11 H 1.07996 * 119.99611 * 217.56495 * 10 9 8 12 12 C 1.38810 * 119.99981 * 37.56074 * 10 9 8 13 13 N 1.31613 * 120.00215 * 21.51649 * 12 10 9 14 14 Si 1.86802 * 119.99811 * 201.51081 * 12 10 9 15 15 H 1.48498 * 109.46981 * 60.00255 * 14 12 10 16 16 H 1.48500 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47152 * 300.00194 * 14 12 10 18 18 C 1.46490 * 120.00049 * 269.99902 * 9 8 7 19 19 C 1.52997 * 109.47288 * 95.33437 * 18 9 8 20 20 N 1.31123 * 106.89827 * 359.77268 * 7 6 5 21 21 H 1.09001 * 109.47200 * 59.99678 * 1 2 3 22 22 H 1.08995 * 109.47215 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46705 * 299.99615 * 1 2 3 24 24 H 1.09006 * 109.46897 * 239.99867 * 2 1 3 25 25 H 1.09001 * 109.47200 * 120.00321 * 2 1 3 26 26 H 1.08997 * 109.46800 * 300.00239 * 3 2 1 27 27 H 1.08996 * 109.46950 * 60.00535 * 3 2 1 28 28 H 1.09004 * 109.47373 * 29.97544 * 8 7 6 29 29 H 1.08998 * 109.47076 * 149.97130 * 8 7 6 30 30 H 0.97004 * 120.00168 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47362 * 215.33286 * 18 9 8 32 32 H 1.09004 * 109.47650 * 335.33422 * 18 9 8 33 33 H 1.08996 * 109.47274 * 300.00197 * 19 18 9 34 34 H 1.09010 * 109.47082 * 59.99792 * 19 18 9 35 35 H 1.08996 * 109.47536 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3157 1.4430 -1.0484 6 8 5.4816 1.4433 -0.7137 7 6 5.5701 1.4434 0.6197 8 6 6.8376 1.4442 1.4350 9 7 7.2488 0.0632 1.6997 10 6 8.0827 -0.5823 0.8260 11 1 7.9391 -1.6323 0.6185 12 6 9.1124 0.1131 0.2071 13 7 9.5648 1.2293 0.7379 14 14 9.8559 -0.5353 -1.3791 15 1 8.8020 -0.6189 -2.4219 16 1 10.9308 0.3830 -1.8336 17 1 10.4265 -1.8858 -1.1425 18 6 6.7681 -0.6270 2.8991 19 6 5.5310 -1.4563 2.5489 20 7 4.3435 1.4481 1.0831 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 7.6245 1.9581 0.8829 29 1 6.6615 1.9584 2.3798 30 1 10.2841 1.7154 0.3052 31 1 7.5507 -1.2843 3.2783 32 1 6.5092 0.1073 3.6619 33 1 4.7485 -0.7992 2.1697 34 1 5.7899 -2.1908 1.7861 35 1 5.1736 -1.9703 3.4411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299337178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:58 Heat of formation + Delta-G solvation = 68.057306 kcal Electronic energy + Delta-G solvation = -17555.716166 eV Core-core repulsion = 14785.331662 eV Total energy + Delta-G solvation = -2770.384504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.65773 -36.32242 -36.01692 -33.94149 -32.02546 -31.78204 -29.23952 -27.60977 -26.53576 -23.93555 -22.86890 -21.88451 -20.88312 -20.06516 -17.34764 -16.91627 -16.42624 -15.24169 -14.88968 -14.41686 -14.02581 -13.86269 -13.66958 -13.38947 -12.52900 -12.35685 -12.09589 -11.86967 -11.66185 -11.45969 -11.36177 -11.16212 -10.85146 -10.74569 -10.72613 -10.56231 -10.35735 -10.27005 -10.10045 -9.90712 -9.06692 -8.66267 -6.88983 -6.03769 -3.61130 2.00791 2.96735 3.32249 3.38074 3.43310 3.85611 4.26600 4.37835 4.71062 5.01198 5.06830 5.18222 5.25826 5.35762 5.60315 5.64850 5.74193 5.88224 6.01041 6.04699 6.19738 6.25055 6.29293 6.32691 6.40690 6.59974 6.65717 6.78573 6.83644 7.09715 7.16971 7.67601 8.28090 8.92065 9.02229 9.54582 10.10405 10.99069 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.007286 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.066526 B = 3842.159953 C = 4186.967377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.021 4.021 4 C 0.154 3.846 5 N -0.409 5.409 6 O 0.070 5.930 7 C 0.201 3.799 8 C 0.217 3.783 9 N -0.561 5.561 10 C -0.274 4.274 11 H 0.065 0.935 12 C 0.023 3.977 13 N -0.880 5.880 14 Si 0.901 3.099 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.143 3.857 19 C -0.171 4.171 20 N -0.510 5.510 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 0.184 0.917 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.060 4.060 4 C -0.120 4.120 5 N -0.122 5.122 6 O 0.016 5.984 7 C -0.021 4.021 8 C 0.086 3.914 9 N -0.281 5.281 10 C -0.403 4.403 11 H 0.083 0.917 12 C -0.179 4.179 13 N -0.521 5.521 14 Si 0.729 3.271 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.204 1.204 18 C 0.017 3.983 19 C -0.230 4.230 20 N -0.246 5.246 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.557 0.292 0.399 11.567 hybrid contribution 0.433 -0.395 -0.910 1.082 sum -11.124 -0.103 -0.511 11.136 Atomic orbital electron populations 1.21742 0.95170 1.01812 1.01832 1.21474 0.95854 0.95517 1.02899 1.19843 0.83973 0.98488 1.03673 1.25679 0.99638 1.01842 0.84797 1.74501 0.90218 1.22726 1.24761 1.85301 1.21274 1.65528 1.26282 1.31790 0.98648 0.90346 0.81347 1.19998 0.86100 0.89842 0.95426 1.43784 1.50898 1.11145 1.22243 1.19015 1.06181 0.95206 1.19926 0.91733 1.25217 0.95377 0.97664 0.99641 1.69926 1.26481 1.18038 1.37645 0.86400 0.78568 0.78474 0.83659 1.20352 1.21212 1.20424 1.20955 0.94120 0.94833 0.88384 1.22324 1.00217 1.00497 1.00001 1.71866 1.00179 1.23308 1.29230 0.92677 0.92519 0.92497 0.91815 0.91329 0.89957 0.89315 0.85765 0.90322 0.92800 0.92897 0.93963 0.92928 0.93568 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 3 C -0.02 -0.29 5.84 -27.88 -0.16 -0.46 16 4 C 0.15 2.94 7.47 -156.37 -1.17 1.78 16 5 N -0.41 -8.74 12.16 30.90 0.38 -8.36 16 6 O 0.07 1.60 11.31 18.11 0.20 1.81 16 7 C 0.20 4.42 7.94 -13.06 -0.10 4.31 16 8 C 0.22 4.88 5.95 -5.19 -0.03 4.85 16 9 N -0.56 -13.34 2.42 -174.61 -0.42 -13.76 16 10 C -0.27 -7.15 9.45 -15.06 -0.14 -7.29 16 11 H 0.07 1.71 7.92 -52.49 -0.42 1.29 16 12 C 0.02 0.60 4.95 -17.43 -0.09 0.51 16 13 N -0.88 -23.51 11.48 55.49 0.64 -22.87 16 14 Si 0.90 20.90 29.61 -169.99 -5.03 15.87 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 C 0.14 2.93 6.44 -4.05 -0.03 2.91 16 19 C -0.17 -3.26 10.21 37.16 0.38 -2.88 16 20 N -0.51 -10.51 10.65 -9.87 -0.11 -10.62 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.13 3.05 5.52 -51.93 -0.29 2.76 16 29 H 0.08 1.62 7.86 -51.93 -0.41 1.21 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.04 0.80 7.83 -51.93 -0.41 0.40 16 33 H 0.05 1.06 7.05 -51.93 -0.37 0.69 16 34 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -27.89 298.87 -6.21 -34.10 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.24 Total: -1.66 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.13 Total: 0.98 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.49 Total: -55.61 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.20 Total: 1.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.89 -6.21 -34.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299337178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.159 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds