Wall clock time and date at job start Sun Mar 29 2020 22:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50700 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.29947 * 126.28712 * 90.02820 * 4 3 2 6 6 O 1.21304 * 110.24820 * 179.97438 * 5 4 3 7 7 C 1.33638 * 109.81238 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.54939 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47188 * 269.97497 * 8 7 6 10 10 C 1.36944 * 119.99770 * 90.00237 * 9 8 7 11 11 H 1.07996 * 119.99611 * 217.56495 * 10 9 8 12 12 C 1.38810 * 119.99981 * 37.56074 * 10 9 8 13 13 N 1.31613 * 120.00215 * 21.51649 * 12 10 9 14 14 Si 1.86802 * 119.99811 * 201.51081 * 12 10 9 15 15 H 1.48498 * 109.46981 * 60.00255 * 14 12 10 16 16 H 1.48500 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47152 * 300.00194 * 14 12 10 18 18 C 1.46490 * 120.00049 * 269.99902 * 9 8 7 19 19 C 1.52997 * 109.47288 * 95.33437 * 18 9 8 20 20 N 1.31123 * 106.89827 * 359.77268 * 7 6 5 21 21 H 1.09001 * 109.47200 * 59.99678 * 1 2 3 22 22 H 1.08995 * 109.47215 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46705 * 299.99615 * 1 2 3 24 24 H 1.09006 * 109.46897 * 239.99867 * 2 1 3 25 25 H 1.09001 * 109.47200 * 120.00321 * 2 1 3 26 26 H 1.08997 * 109.46800 * 300.00239 * 3 2 1 27 27 H 1.08996 * 109.46950 * 60.00535 * 3 2 1 28 28 H 1.09004 * 109.47373 * 29.97544 * 8 7 6 29 29 H 1.08998 * 109.47076 * 149.97130 * 8 7 6 30 30 H 0.97004 * 120.00168 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47362 * 215.33286 * 18 9 8 32 32 H 1.09004 * 109.47650 * 335.33422 * 18 9 8 33 33 H 1.08996 * 109.47274 * 300.00197 * 19 18 9 34 34 H 1.09010 * 109.47082 * 59.99792 * 19 18 9 35 35 H 1.08996 * 109.47536 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3157 1.4430 -1.0484 6 8 5.4816 1.4433 -0.7137 7 6 5.5701 1.4434 0.6197 8 6 6.8376 1.4442 1.4350 9 7 7.2488 0.0632 1.6997 10 6 8.0827 -0.5823 0.8260 11 1 7.9391 -1.6323 0.6185 12 6 9.1124 0.1131 0.2071 13 7 9.5648 1.2293 0.7379 14 14 9.8559 -0.5353 -1.3791 15 1 8.8020 -0.6189 -2.4219 16 1 10.9308 0.3830 -1.8336 17 1 10.4265 -1.8858 -1.1425 18 6 6.7681 -0.6270 2.8991 19 6 5.5310 -1.4563 2.5489 20 7 4.3435 1.4481 1.0831 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 7.6245 1.9581 0.8829 29 1 6.6615 1.9584 2.3798 30 1 10.2841 1.7154 0.3052 31 1 7.5507 -1.2843 3.2783 32 1 6.5092 0.1073 3.6619 33 1 4.7485 -0.7992 2.1697 34 1 5.7899 -2.1908 1.7861 35 1 5.1736 -1.9703 3.4411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299337178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:58 Heat of formation + Delta-G solvation = 51.780633 kcal Electronic energy + Delta-G solvation = -17556.421975 eV Core-core repulsion = 14785.331662 eV Total energy + Delta-G solvation = -2771.090314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.30840 -38.11466 -37.39001 -35.31492 -33.91844 -33.33369 -30.94351 -28.75099 -28.37281 -25.74621 -24.37997 -23.18880 -22.44190 -21.63539 -19.12649 -18.65635 -18.10363 -16.96449 -16.23829 -15.77333 -15.74818 -15.58503 -15.27470 -14.44600 -14.23206 -13.74390 -13.64750 -13.26780 -13.05699 -12.91564 -12.86267 -12.63860 -12.53284 -12.42567 -12.23283 -12.10702 -11.94648 -11.87714 -11.65614 -11.52944 -10.73675 -10.61574 -8.79579 -8.00481 -5.61464 0.31733 1.36736 1.46092 1.50419 1.55695 2.14921 2.45772 2.83930 3.16375 3.28655 3.59211 4.00474 4.02224 4.15689 4.39206 4.46906 4.57094 4.63130 4.70918 4.75539 4.82694 4.88629 4.98264 5.05039 5.08298 5.17725 5.22162 5.22207 5.33386 5.37583 5.51116 5.63767 6.34521 6.99081 7.34052 7.63661 8.16921 8.99686 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.007286 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.066526 B = 3842.159953 C = 4186.967377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.022 4.022 4 C 0.164 3.836 5 N -0.426 5.426 6 O 0.039 5.961 7 C 0.197 3.803 8 C 0.223 3.777 9 N -0.575 5.575 10 C -0.285 4.285 11 H 0.054 0.946 12 C -0.013 4.013 13 N -0.901 5.901 14 Si 0.950 3.050 15 H -0.287 1.287 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.139 3.861 19 C -0.157 4.157 20 N -0.508 5.508 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.028 0.972 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 0.038 1.323 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.060 4.060 4 C -0.110 4.110 5 N -0.144 5.144 6 O -0.009 6.009 7 C -0.026 4.026 8 C 0.092 3.908 9 N -0.296 5.296 10 C -0.415 4.415 11 H 0.072 0.928 12 C -0.213 4.213 13 N -0.542 5.542 14 Si 0.778 3.222 15 H -0.214 1.214 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.014 3.986 19 C -0.216 4.216 20 N -0.244 5.244 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.279 0.138 0.817 13.305 hybrid contribution 0.875 -0.343 -0.993 1.367 sum -12.405 -0.206 -0.176 12.408 Atomic orbital electron populations 1.21698 0.92294 1.02799 1.03035 1.21439 0.98244 0.94160 1.01486 1.20180 0.80445 0.99825 1.05578 1.26605 1.01559 0.99087 0.83703 1.74508 0.89881 1.24349 1.25630 1.85275 1.22367 1.66523 1.26702 1.31608 0.99033 0.90691 0.81260 1.19815 0.85724 0.89329 0.95893 1.43940 1.51151 1.11471 1.22990 1.19100 1.06630 0.95076 1.20685 0.92788 1.25743 0.95904 0.98064 1.01584 1.69996 1.26961 1.18803 1.38464 0.85626 0.77636 0.78340 0.80629 1.21387 1.20818 1.19688 1.21083 0.94529 0.95231 0.87735 1.22165 0.98994 0.99667 1.00798 1.71887 0.99754 1.23144 1.29626 0.91538 0.91708 0.91232 0.93351 0.92689 0.88108 0.87297 0.87953 0.88574 0.92887 0.93199 0.92226 0.94124 0.95291 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 3 C -0.02 -0.56 5.84 29.85 0.17 -0.38 16 4 C 0.16 6.07 7.47 138.46 1.03 7.11 16 5 N -0.43 -18.09 12.16 -60.32 -0.73 -18.82 16 6 O 0.04 1.84 11.31 74.87 0.85 2.68 16 7 C 0.20 8.64 7.94 88.38 0.70 9.34 16 8 C 0.22 10.06 5.95 85.63 0.51 10.57 16 9 N -0.58 -27.35 2.42 -706.36 -1.71 -29.06 16 10 C -0.29 -15.02 9.45 84.03 0.79 -14.22 16 11 H 0.05 2.91 7.92 -2.91 -0.02 2.88 16 12 C -0.01 -0.68 4.95 84.86 0.42 -0.26 16 13 N -0.90 -48.58 11.48 21.65 0.25 -48.33 16 14 Si 0.95 43.29 29.61 68.60 2.03 45.32 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 C 0.14 5.57 6.44 86.38 0.56 6.13 16 19 C -0.16 -5.77 10.21 71.98 0.73 -5.03 16 20 N -0.51 -20.41 10.65 -303.21 -3.23 -23.64 16 21 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.10 5.13 5.52 -2.39 -0.01 5.11 16 29 H 0.10 3.90 7.86 -2.39 -0.02 3.88 16 30 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 32 H 0.06 2.17 7.83 -2.38 -0.02 2.15 16 33 H 0.04 1.57 7.05 -2.39 -0.02 1.55 16 34 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -59.16 298.87 4.34 -54.82 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.07 Total: 7.87 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.82 Total: 9.16 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -5.42 Total: -119.85 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.85 Total: 2.68 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.16 4.34 -54.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299337178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.602 kcal (2) G-P(sol) polarization free energy of solvation -59.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds