Wall clock time and date at job start Sun Mar 29 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47266 * 2 1 4 4 N 1.29948 * 126.28813 * 270.02895 * 3 2 1 5 5 O 1.21295 * 110.25220 * 179.68143 * 4 3 2 6 6 C 1.33641 * 109.81196 * 0.47185 * 5 4 3 7 7 C 1.50693 * 126.55346 * 179.80199 * 6 5 4 8 8 H 1.08999 * 109.47479 * 194.68113 * 7 6 5 9 9 C 1.53002 * 109.47388 * 74.68224 * 7 6 5 10 10 N 1.46495 * 109.47263 * 314.68387 * 7 6 5 11 11 C 1.36935 * 120.00021 * 245.68897 * 10 7 6 12 12 H 1.08008 * 120.00426 * 145.46218 * 11 10 7 13 13 C 1.38818 * 120.00079 * 325.45158 * 11 10 7 14 14 N 1.31617 * 119.99597 * 346.03543 * 13 11 10 15 15 Si 1.86795 * 119.99955 * 166.02918 * 13 11 10 16 16 H 1.48501 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47000 * 120.00667 * 15 13 11 18 18 H 1.48501 * 109.47418 * 240.00510 * 15 13 11 19 19 C 1.46499 * 120.00143 * 65.68187 * 10 7 6 20 20 C 1.53006 * 109.46844 * 95.61449 * 19 10 7 21 21 N 1.31135 * 106.89308 * 359.53428 * 6 5 4 22 22 H 1.08998 * 109.47406 * 60.00122 * 1 2 3 23 23 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46808 * 299.99852 * 1 2 3 25 25 H 1.09003 * 109.46738 * 239.99644 * 2 1 3 26 26 H 1.08996 * 109.46984 * 120.00520 * 2 1 3 27 27 H 1.08993 * 109.47085 * 300.00501 * 9 7 6 28 28 H 1.09001 * 109.46925 * 60.00186 * 9 7 6 29 29 H 1.08999 * 109.47251 * 179.97438 * 9 7 6 30 30 H 0.96998 * 119.99579 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47182 * 335.61765 * 19 10 7 32 32 H 1.09000 * 109.47364 * 215.61228 * 19 10 7 33 33 H 1.09005 * 109.46620 * 180.02562 * 20 19 10 34 34 H 1.09000 * 109.46960 * 300.00026 * 20 19 10 35 35 H 1.08992 * 109.47148 * 60.00204 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2882 2.1460 -1.0474 5 8 2.6710 3.2471 -0.7124 6 6 2.7063 3.3281 0.6211 7 6 3.1284 4.5227 1.4369 8 1 3.3022 4.2155 2.4681 9 6 2.0248 5.5817 1.3994 10 7 4.3620 5.0832 0.8799 11 6 5.5212 5.0449 1.6078 12 1 6.4690 4.9114 1.1075 13 6 5.4782 5.1779 2.9889 14 7 4.3818 5.6106 3.5745 15 14 6.9764 4.7427 4.0162 16 1 8.0720 4.2847 3.1245 17 1 7.4224 5.9401 4.7731 18 1 6.6260 3.6579 4.9679 19 6 4.3555 5.6844 -0.4560 20 6 4.1712 7.1983 -0.3330 21 7 2.2977 2.1712 1.0840 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8510 5.8890 0.3683 28 1 1.1070 5.1648 1.8140 29 1 2.3300 6.4456 1.9899 30 1 4.3516 5.7032 4.5396 31 1 3.5359 5.2648 -1.0394 32 1 5.3016 5.4729 -0.9543 33 1 4.1659 7.6456 -1.3270 34 1 3.2251 7.4098 0.1653 35 1 4.9908 7.6179 0.2503 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299371433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:25 Heat of formation + Delta-G solvation = 73.623954 kcal Electronic energy + Delta-G solvation = -17848.645764 eV Core-core repulsion = 15078.502647 eV Total energy + Delta-G solvation = -2770.143116 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.78615 -36.84702 -35.73433 -33.26388 -32.03538 -31.31799 -29.69072 -28.42756 -24.73110 -24.36839 -23.43062 -22.25922 -20.98355 -19.55655 -17.44218 -17.11919 -16.25292 -15.27029 -14.56345 -14.27845 -14.09632 -13.82740 -13.50464 -12.78432 -12.44506 -12.24960 -11.84247 -11.80144 -11.62644 -11.54774 -11.16453 -11.11877 -10.99068 -10.76313 -10.66846 -10.43942 -10.28816 -10.15725 -9.90102 -9.73323 -9.17575 -8.64469 -6.90374 -6.01874 -3.53099 1.91329 2.92352 3.29823 3.38906 3.40896 3.74378 4.17629 4.36855 4.63398 5.13298 5.26030 5.26812 5.37677 5.39001 5.78333 5.82158 6.06399 6.09664 6.14870 6.18431 6.30085 6.39526 6.47247 6.52928 6.57733 6.63968 6.75521 6.94050 7.21213 7.23053 7.30424 7.68228 8.30633 8.88711 9.00849 9.58573 10.13306 11.06708 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.008217 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.717423 B = 3406.857403 C = 3983.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C 0.157 3.843 4 N -0.411 5.411 5 O 0.064 5.936 6 C 0.203 3.797 7 C 0.260 3.740 8 H 0.148 0.852 9 C -0.142 4.142 10 N -0.570 5.570 11 C -0.265 4.265 12 H 0.069 0.931 13 C 0.015 3.985 14 N -0.893 5.893 15 Si 0.906 3.094 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.286 1.286 19 C 0.135 3.865 20 C -0.164 4.164 21 N -0.506 5.506 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.260 0.740 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.051 0.949 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -4.430 -4.924 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.116 4.116 4 N -0.124 5.124 5 O 0.011 5.989 6 C -0.019 4.019 7 C 0.148 3.852 8 H 0.165 0.835 9 C -0.201 4.201 10 N -0.290 5.290 11 C -0.394 4.394 12 H 0.087 0.913 13 C -0.185 4.185 14 N -0.536 5.536 15 Si 0.735 3.265 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.212 1.212 19 C 0.010 3.990 20 C -0.223 4.223 21 N -0.240 5.240 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.723 -4.952 -5.265 9.219 hybrid contribution 0.830 -0.094 0.646 1.056 sum -4.892 -5.046 -4.619 8.410 Atomic orbital electron populations 1.21708 0.93850 1.02126 1.02580 1.19785 0.96352 0.86559 1.03943 1.25758 1.01084 1.00178 0.84559 1.74474 1.19283 0.93912 1.24713 1.85270 1.61195 1.26223 1.26227 1.31797 0.90607 0.98375 0.81092 1.19500 0.86494 0.83036 0.96144 0.83523 1.22144 0.96789 1.00440 1.00728 1.43937 1.06389 1.63336 1.15350 1.19199 0.85957 1.45305 0.88934 0.91301 1.25233 0.97448 0.97964 0.97884 1.69851 1.27297 1.46571 1.09868 0.86170 0.82229 0.77905 0.80160 1.20074 1.21328 1.21228 1.20992 0.98990 0.91862 0.87178 1.22314 1.02218 0.98676 0.99075 1.71909 1.20268 1.02587 1.29233 0.92557 0.91579 0.92016 0.89788 0.89106 0.94040 0.93980 0.89331 0.92994 0.93670 0.93874 0.94852 0.93001 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.03 -0.38 6.56 -27.89 -0.18 -0.57 16 3 C 0.16 3.01 7.47 -156.38 -1.17 1.84 16 4 N -0.41 -8.34 12.16 30.89 0.38 -7.97 16 5 O 0.06 1.37 9.33 18.11 0.17 1.54 16 6 C 0.20 4.46 7.20 -13.06 -0.09 4.37 16 7 C 0.26 5.91 2.35 -69.09 -0.16 5.74 16 8 H 0.15 3.78 5.72 -51.93 -0.30 3.49 16 9 C -0.14 -2.85 8.00 37.16 0.30 -2.55 16 10 N -0.57 -13.47 2.36 -166.98 -0.39 -13.87 16 11 C -0.26 -6.84 9.54 -15.06 -0.14 -6.98 16 12 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16 13 C 0.01 0.38 4.96 -17.43 -0.09 0.30 16 14 N -0.89 -23.51 11.07 55.49 0.61 -22.89 16 15 Si 0.91 20.75 29.58 -169.99 -5.03 15.72 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.14 2.78 5.42 -4.04 -0.02 2.76 16 20 C -0.16 -3.08 9.99 37.16 0.37 -2.70 16 21 N -0.51 -10.91 11.55 -9.87 -0.11 -11.03 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.77 6.62 -51.93 -0.34 0.42 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.91 7.84 -51.93 -0.41 1.50 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.04 0.89 5.88 -51.93 -0.31 0.58 16 32 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.98 6.06 -51.93 -0.31 0.66 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -27.55 290.27 -5.84 -33.39 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.02 Total: -0.15 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.82 Total: 0.88 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.48 Total: -55.75 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.17 Total: 1.54 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.55 -5.84 -33.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299371433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.018 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds